Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021804
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   4.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.0  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 158  VLYLSIYEWPFFFFSSYPDAVFLSLTPIMTVTLEMYEFLHVQEHNAHMTL 9
            +LYL ++ WP +        +FLSL  I++++      L   E N  ++L
Sbjct: 935  ILYLKVFTWPLY-------TIFLSLGQILSISSFQLSLLSGFEDNNQISL 977


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 395  FFFNLVHIELNQRYICLRNSILYFIIVSL*FLVVQRAVHYT 517
            FF NL  I      IC  + +   +IV L FL     V+YT
Sbjct: 1023 FFRNLFQIVFVLAVICYSSPMFMILIVPLFFLYRYNQVYYT 1063


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 464  NIKWNFVDKYIVGLTQYAQD 405
            N  WN+VD+ I G   Y  D
Sbjct: 969  NYNWNYVDQLICGFETYLPD 988


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,820
Number of Sequences: 5004
Number of extensions: 53806
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)