Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021804
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0569 - 9528027-9529256,9530019-9530260,9530374-9531161,953...    29   4.8  

>03_02_0569 -
           9528027-9529256,9530019-9530260,9530374-9531161,
           9531613-9531953,9532090-9532310,9532392-9532702,
           9532779-9533038,9533691-9533891,9533992-9534167,
           9534242-9534296,9535739-9536146
          Length = 1410

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 149 LSIYEWPFFFFSSYPDAVFLSLTPIMTVTLEM 54
           LSI EWP+    +   A+F S  P++  T+ +
Sbjct: 830 LSIAEWPYALLGTIGAAIFGSFNPLLAYTIAL 861


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,572,165
Number of Sequences: 37544
Number of extensions: 245580
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)