Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021804
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +2

Query: 236 PVI*FNILKVNFIFRFTDIIQIVTYLESXKNIYSV*FLHCKFVHSSGNY 382
           PV   N+ K+N  + F D I +  YL+  ++  +V  LH   VHS  N+
Sbjct: 439 PVADANV-KINDRYEFYDKIDLDRYLQELEDTPAVYTLHAVLVHSGDNH 486


>SB_38025| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 590 NKFCECSLKMVLTSFYFYFR*TF 658
           NK C+C  +MV+  + FY+R  F
Sbjct: 101 NKGCQCERRMVIAKWQFYYRKMF 123


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 206 SHYPHQCTCIYPHKITVLYLSIYEWPFFFFSSYPD 102
           + YPH CT +  H  T   ++ Y   + F + YP+
Sbjct: 432 TRYPHNCTSVRQHPYTWKSVTQYPHNWTFITRYPN 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,355,014
Number of Sequences: 59808
Number of extensions: 329294
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)