Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021804
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical ...    29   3.3  
U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AL132876-2|CAB60843.3|  534|Caenorhabditis elegans Hypothetical
           protein Y105E8A.2 protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 340 Y*VDIFXTF*ICHNLYYISEPEDKI 266
           Y +D++ T+ +CH  Y I   EDK+
Sbjct: 111 YLIDVYWTYQVCHGRYVIQYHEDKM 135


>U58738-1|AAB00602.1|  290|Caenorhabditis elegans Hypothetical
           protein F31A9.4 protein.
          Length = 290

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 248 FNILKVNFIFRFTDIIQIVTYLESXKNIYSV*FLHCKFVHSS 373
           F +LK+  ++RF  I+     +++ KNI+S     C+  HSS
Sbjct: 33  FVLLKICSLYRF-QILDFFPTIQNNKNIFSHGIKFCELAHSS 73


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -1

Query: 231 VFFFK*LIITLSTSMHLYLSSQNNCFILINLRMALFFFFKLS*CRISKFDTDHDCDVRNV 52
           +FFF+  I+T     HLY + QN+ +++I + +++  +       I   D DH+    N+
Sbjct: 1   MFFFQLPIVT-----HLYKTGQNSSYLVIYISISILSYLVGMVWNIFDMDQDHNHSTLNL 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,629,354
Number of Sequences: 27780
Number of extensions: 289367
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)