Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021804
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 318 LSKYVTICIISVNLKIKLTFKILN 247
           L KY+   +I V L + +T  ILN
Sbjct: 298 LGKYLLFTMILVGLSVVITIVILN 321


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 318 LSKYVTICIISVNLKIKLTFKILN 247
           L KY+   ++ V L + +T  +LN
Sbjct: 299 LGKYLLFTMVLVTLSVVVTIAVLN 322


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 223  KKNYTGDLIQYFKSQFY 273
            KK Y  DLIQ   SQ Y
Sbjct: 1043 KKTYVQDLIQAEASQIY 1059


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 310 ICHNLYYISEPEDKIDF*NIE 248
           + HNLYY S   + + + N E
Sbjct: 260 VTHNLYYNSPSSENLYYVNTE 280


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 318 LSKYVTICIISVNLKIKLTFKILN 247
           L KY+   +I V++ I +T  +LN
Sbjct: 307 LGKYLIFAMILVSISICVTVVVLN 330


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 318 LSKYVTICIISVNLKIKLTFKILN 247
           L KY+   +I V++ I +T  +LN
Sbjct: 307 LGKYLIFAMILVSISICVTVVVLN 330


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 318 LSKYVTICIISVNLKIKLTFKILN 247
           L KY+   +I V L I +T  +LN
Sbjct: 312 LGKYLLFTMILVTLSIWITVCVLN 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,466
Number of Sequences: 438
Number of extensions: 3664
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)