Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021803
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    26   0.21 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   3.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.1  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 501 IHSATVRRTASWCFCNSMNAFVALSST 421
           +H+ T+R T SW F   ++ F+ L+ST
Sbjct: 91  VHAITIRSTFSWTF---IDVFIMLTST 114


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 432  TPRKRSSSYKSTNSQSGARSRNGSS*PEAAVAVRSKGIDSL 554
            +P + S+S  S++     RS NG   P  ++   S   DSL
Sbjct: 929  SPCRNSASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDSL 969



 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 544 IPFERTATAASGQLDPFRDRAPD 476
           +P+   A AA+  L P  + +PD
Sbjct: 286 LPYFAAAVAAASNLSPKTNSSPD 308


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -2

Query: 374 TCTEPAKCSEASRPEVGLLTPSCNNRVG--FCL*STGPL 264
           +C    K   ++RP  G LTP   + +G   C+   GPL
Sbjct: 171 SCDLCQKTKSSNRPHQGPLTPILYDHIGDLVCVDFYGPL 209


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 353 TSLVPYTLQSAVRMKKLYYLMSNVDDNATKAFIELQKH 466
           T L PY     +  +  YY ++++     KAF  L  H
Sbjct: 263 TGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAFPPLSLH 300


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 417 LMWTTTPRKRSSSYKSTNSQSGARS 491
           L  +  PR  S   KS+ S SGA S
Sbjct: 117 LFHSAAPRTASRETKSSESDSGASS 141


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 76  TSYRTCSLASCCLSFRVSVMSFLR 5
           T +R C  A+C   FR+   S LR
Sbjct: 884 TCWRECDKATCEKLFRMKKSSALR 907


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,687
Number of Sequences: 336
Number of extensions: 3175
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)