Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021803
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   6.4  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   6.4  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.4  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   8.5  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   8.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   8.5  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   8.5  

>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 426 TTTPRKRSSSYKSTNSQSGARSRNGSS*PEAAVAVRSKGIDSLKS 560
           TT+P   SSS  S++S S + S + SS   ++ +  S    S  S
Sbjct: 152 TTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +2

Query: 290 ILHGYYMTALEDRLLVERLLNTSLVPYTLQSAVRMKKLYYLMSNV 424
           ++H     + E +  +ERL+N +L PY  ++ +   +      N+
Sbjct: 486 LVHSSKKVSYETKYRIERLVNAALKPYYREAKISKDQFALFNKNI 530


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 380 TVTCTEPAKCSEASRPEVGLLTPS 309
           +V C E  K S+ S P+ G LTPS
Sbjct: 539 SVECLELDKGSDCSTPKSGSLTPS 562


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 193 SFLILNFLSNVLSLTKCRRSSDSATAWKSLWAVAMIAMTTSYRTCSLASCCLSF 32
           S ++ NF+  + S T+C     ++T +    ++A+     S+   SL  C L F
Sbjct: 223 SIVVNNFVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSH-VVSLQECLLKF 275


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 290 ILHGYYMTALEDRLLVERLLNTSLVPYTLQSAVRMKKLYYLMSNVDD 430
           +LHGY+  A    L   R+   ++V   L S +   +L Y++  +++
Sbjct: 398 LLHGYHFMASSTELPWLRVTCNAIVTKCLDSQLPSVRLSYILDTLEE 444


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 9   RKDITETLKLR-QHDANEQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLD 170
           ++D+ E LKL  QH      R  VV     T  +D   ++E+   LHF K+R LD
Sbjct: 511 KQDVEEELKLPPQHRICMTTRLSVVEE---TNYQDL--LSEAAKSLHFFKDRNLD 560


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 197 HVRPGHDLQEVLDRGKRAGPTEKAVQWIKDKILHGYYMTALEDRLLVERLLNT 355
           +VR     Q + DR      TE A +W+ +K     Y     +RL+ +R+LNT
Sbjct: 710 NVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNT 762


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,071
Number of Sequences: 5004
Number of extensions: 53310
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)