Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021803
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 32 0.30
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 31 0.93
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 29 2.1
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 2.8
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 29 3.7
01_01_1134 + 8994315-8995892 28 5.0
09_04_0199 - 15533619-15534107,15534956-15535362,15535559-155358... 27 8.7
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220... 27 8.7
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 27 8.7
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 14 RHNRDPETEAARRQRTGPV*GRHGDHRDGPKRLPSGRRV*GPPAFRQRKN 163
RH+RD E E+ R RHG HRDG +R S PPA ++ ++
Sbjct: 54 RHHRDDEEESRSR--------RHGHHRDGGRRSLSPSESPPPPAAKRERS 95
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 30.7 bits (66), Expect = 0.93
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 413 MSNVDDNATKAFIELQKHQLAVRRTVAEWIELTGSRRRRPFKRN 544
M +VD++A + L ++ R+T++EW +L + P R+
Sbjct: 175 MDSVDNDADSSDENLSNDKILTRKTISEWCQLVAKEPKAPSLRS 218
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 562 QDFSESIPFERTATAASGQLDPFRDRAPDCELVLL*LDERFRGVVVHIRHQVVQLL 395
+D S S+P E + ASG L P DC ++L L+ VV R Q ++ L
Sbjct: 141 EDASGSLPAEDSDERASGSLTPLHSMLDDCSRLVLELNS-----VVRAREQEIESL 191
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 504 SIHSATVRRTASWCF 460
S HS + RRT+SWCF
Sbjct: 228 SAHSVSARRTSSWCF 242
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/62 (20%), Positives = 29/62 (46%)
Frame = +3
Query: 57 EQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLDKKFKIRKEAMSGLAMIYKKFLT 236
E++RY+ + + T ++ A + +KE +++ + KE GL + K F+
Sbjct: 490 ERLRYQKIEELKETIRKTEDAKGNARQEYELIKENNMNEIIRFNKEKRHGLVEMLKGFVR 549
Query: 237 EE 242
+
Sbjct: 550 NQ 551
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 83 GDHRDGPKRLPSG 121
GDH DGP+RLP G
Sbjct: 21 GDHGDGPRRLPRG 33
>09_04_0199 -
15533619-15534107,15534956-15535362,15535559-15535862,
15537061-15538397,15539463-15539727
Length = 933
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 589 LGKEFGTYVQDFSESIPFERTATAASGQLDPFRD 488
+G G+YV D + F+RT A LD F D
Sbjct: 692 VGYPNGSYVADLLRGLGFDRTKLRAYNDLDGFAD 725
>01_06_1609 +
38621264-38621386,38621521-38621578,38621778-38622013,
38622536-38622652,38622690-38622798,38622973-38623064,
38623191-38623265,38623333-38623421,38623576-38623625,
38623830-38623870,38623963-38624172,38624278-38624345,
38624434-38624494,38624607-38624840
Length = 520
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 423 WTTTPRKRSSSYKSTNSQSGARSRNGSS*PEA 518
W +KR +S + +GA S NGSS P +
Sbjct: 464 WAQKAKKRKGLKESNGAMAGAGSTNGSSQPSS 495
>01_06_1127 -
34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = +1
Query: 127 SLRTSCISSKKER*IRSLKSGRKPCPAWP*STRSS*PRKACRPYRESGPVDQRQNPTRLL 306
S R SS R S+ SG+KP A P +T+ S P K+ + G + + ++
Sbjct: 522 SAREVMDSSSMRRSAASMLSGKKPVQAVP-ATKKSGPAKSATAKKTDGGPQSKASAAPVI 580
Query: 307 HDGVRRPTSGREASEHFAGSV 369
D S E E + V
Sbjct: 581 EDVEPSEMSLEEIEEKLSSVV 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,871,703
Number of Sequences: 37544
Number of extensions: 399709
Number of successful extensions: 1229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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