Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021803
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_29415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             29   2.2  
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_19394| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)                   28   5.1  
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   28   6.7  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     27   8.8  

>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 50/86 (58%)
 Frame = +2

Query: 263 KAVQWIKDKILHGYYMTALEDRLLVERLLNTSLVPYTLQSAVRMKKLYYLMSNVDDNATK 442
           K + W+ +K+L  YY  ++ED+L VERLL+  LVP +L +  R+K+L  L + +D++A  
Sbjct: 447 KRLSWVPNKLLVWYYQPSIEDQLCVERLLSGCLVPVSLPAEERVKRLLSLYTRLDEHAVG 506

Query: 443 AFIELQKHQLAVRRTVAEWIELTGSR 520
              +L      V    +E++   G+R
Sbjct: 507 VRSDLAALVQLVGEEKSEFVVKLGAR 532



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 30/91 (32%), Positives = 47/91 (51%)
 Frame = +3

Query: 3   DLRKDITETLKLRQHDANEQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLDKKFK 182
           +L  +++E L+ R  D +++VR EVV      A ++   V  S+ L   + ER  DKK  
Sbjct: 362 ELSSEVSEKLRSRSKDPDDKVRQEVVTGTCEAASQNIDCV--SDKLFEDICERMRDKKSN 419

Query: 183 IRKEAMSGLAMIYKKFLTEESVPALPRKRSS 275
           +R EAM  +  +YKK+ T  +      KR S
Sbjct: 420 VRMEAMICIGKLYKKYTTGATADLSAAKRLS 450


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 5   PEERHNRDPETEAARRQRTGPV*GRHGDHRDGP-KRLPSGR 124
           P+ R +RD   +   R   GPV G H  H  GP +++P  R
Sbjct: 137 PDVRPDRDMMEKVPERAERGPVRGYHKTHERGPIEKMPDRR 177


>SB_29415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 433 RHESVHRVTKAPTRSPAHGRGMDRVDRKPPSPSVQKELIR 552
           R E V R+   PT  P     + R+   P  P +++EL+R
Sbjct: 239 RRELVRRIVNYPTHPPLRRELVRRIVNYPTHPHLRRELVR 278



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 433 RHESVHRVTKAPTRSPAHGRGMDRVDRKPPSPSVQKELIR 552
           R E V R+   PT  P     + R+   P  P +++EL+R
Sbjct: 307 RRELVRRIVNYPTHPPLRRELVRRIVNYPTPPPLRRELVR 346



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 433 RHESVHRVTKAPTRSPAHGRGMDRVDRKPPSPSVQKELIR 552
           R E V R+   PT  P     + R+   P  P +++EL+R
Sbjct: 341 RRELVRRIVNYPTHPPLRRELVRRIVNYPTPPPLRRELVR 380



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 433 RHESVHRVTKAPTRSPAHGRGMDRVDRKPPSPSVQKELIR 552
           R E V R+   PT  P     + R+   P  P +++EL+R
Sbjct: 375 RRELVRRIVNYPTHPPLRRELVRRIVNYPTHPHLRRELVR 414



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 433 RHESVHRVTKAPTRSPAHGRGMDRVDRKPPSPSVQKELIR 552
           RHE V R+   PT        + R+   P  P +++EL+R
Sbjct: 171 RHELVRRIVNYPTYPHLRRELVRRIVNYPTHPHLRRELVR 210


>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = -2

Query: 386  PQTVTCTEPAKCSEASRPEVGLLT---PSCN--NRVGFCL 282
            P  + CTEP   +++SRP  G LT   P  N   +VGFCL
Sbjct: 1131 PFRLVCTEPPPSAKSSRPVPGGLTTVKPGKNIEVKVGFCL 1170


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 124 PSLRT-SCISSKKER*IRSLKSGRKPCPAW 210
           PS+RT SC S++ +R IR   +GR  CP +
Sbjct: 299 PSIRTTSCRSAESQRLIRCACNGRNACPLY 328


>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 158 FFDEMQEVLRLGDRLEVSLGRRDDRHDDLIPDLFVGVVL 42
           F D+ + ++R+G R++ +L   D RH  L+P    G +L
Sbjct: 267 FVDDDKGIIRVGGRVDAALVSYDTRHPILLPSDHRGALL 305


>SB_19394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 230

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -3

Query: 175 FLSNVLSLTKCRRSSDSATAWKSLWAVAMIAMTTSYRTCSLAS 47
           F +N+   T C    D  T   ++WAVA+I  T + R C + S
Sbjct: 176 FTNNLRDRTVCLEPPDYTTGSSTMWAVALI--TNNPRDCPVRS 216


>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
          Length = 698

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 160 LSLTKCRRSSDSATAWKSLWAVAMIAMTTSYRTCS 56
           L +TKC+   +S+T W  L    + AM   Y+TC+
Sbjct: 276 LGITKCQ-GRESSTVWWPLITKQIEAMVNRYQTCA 309


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 365 EPAKCSEASRPEVGLLTPS 309
           + + C++ASRP++GLL P+
Sbjct: 281 DASPCAQASRPQIGLLIPA 299


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 300 PCRILSLIHWTAFSVGPARFPRSRTSCRSWPG 205
           PC +L L      +V P    R +TSC  W G
Sbjct: 63  PCGLLPLHRGARITVAPTHRRRPKTSCVPWGG 94


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 505 LDPFRDRAPDCELVLL 458
           LDP RDRA DC L LL
Sbjct: 665 LDPERDRAMDCALTLL 680


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,287,922
Number of Sequences: 59808
Number of extensions: 455729
Number of successful extensions: 1144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)