Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021803
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    30   1.4  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    29   1.8  
At1g05060.1 68414.m00507 expressed protein                             29   2.4  
At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At2g07773.1 68415.m00889 hypothetical protein                          29   3.1  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    28   4.1  
At5g40300.1 68418.m04888 integral membrane protein, putative MtN...    28   4.1  
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    28   5.5  
At5g10720.1 68418.m01242 sensory transduction histidine kinase-r...    27   7.2  
At1g32160.1 68414.m03956 expressed protein                             27   7.2  
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    27   7.2  
At2g40430.1 68415.m04986 expressed protein identical to Protein ...    27   9.6  
At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative simil...    27   9.6  
At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    27   9.6  

>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
            RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF00397:
            WW domain
          Length = 1088

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 435  PRKRSSSYKSTNSQSGARSRNGS 503
            PR+RSSSY  + S+SG+ SR+ S
Sbjct: 964  PRRRSSSYSRSRSRSGSYSRSRS 986


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 18  ITETLKLRQHDANEQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLDKKFKIRKEA 197
           +   ++ R  D +++VR + +  I+A     F       +L+    ER  DKK  +RK+A
Sbjct: 365 VLTAIQERLLDFDDRVRTQAL--IVACDIMKFNMKYVPLNLISEASERLRDKKISVRKKA 422

Query: 198 MSGLAMIYKKF 230
           +  L  +Y+ +
Sbjct: 423 LQKLTEVYQDY 433


>At1g05060.1 68414.m00507 expressed protein
          Length = 253

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 439 ESVHRVTKAPTRSPAHGRGMDRVDRKPP--SPSVQKELIR*SLAHK 570
           ES H V +   +SPA G+ +      PP   P V  E++R SL  K
Sbjct: 20  ESKHAVNRLAEKSPATGKKLPSSPPDPPEIQPDVLPEILRHSLPSK 65


>At3g60080.1 68416.m06709 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 306

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 603 CAFTDSGRNLVLMCKTLANQFLLNGRRRRLPVNSIH 496
           C+  DS  + VL+C      F++    RRLP + I+
Sbjct: 156 CSTDDSDPDSVLLCAVCKEDFIIGESARRLPCSHIY 191


>At2g07773.1 68415.m00889 hypothetical protein
          Length = 273

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 290 ILHGYYMTALEDRLLVERLLNTSLVPYTLQSAVRMKK-LYYLMSNVDDNATKAFIEL 457
           +  GY++    D   +ER +N  +  + +    R KK  YYL S +  N  K ++EL
Sbjct: 204 VSEGYHIPDERD---IERAINVVMTEHEMIDIDRRKKRFYYLYSRLGKNGDKFWVEL 257


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +1

Query: 436 HESVHRVTKAPTRSPAHGRGMDRVDRKPPSPS 531
           H   H    AP+ SPAH         K PSPS
Sbjct: 251 HAPSHSPAHAPSHSPAHSPSHSPATPKSPSPS 282


>At5g40300.1 68418.m04888 integral membrane protein, putative MtN24
           gene, Medicago truncatula, EMBL:MTY15290; contains Pfam
           PF04535 : Domain of unknown function (DUF588); contains
           4 transmembrane domains;  similar to putative ethylene
           responsive element binding protein (GI:22135858)
           [Arabidopsis thaliana]
          Length = 270

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 136 SSDSATAWKSLWAVAMIAMTTSYRTCSLASCCLSFRVSV 20
           SS S+T  +S WA  +      +R  +  SC +SF V V
Sbjct: 104 SSSSSTPRESKWASLIRKALLGFRVIAFVSCLVSFSVMV 142


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
 Frame = +3

Query: 15  DITETLKLRQHDANEQVRYEVVMAIIATAQRDFQAVAESEDLLHFVKERTLDKKFKIRKE 194
           D  E +  + HDA E V  +   A  + AQ+   A  +  +  H VKE    K  + ++ 
Sbjct: 203 DPKEGVAHKAHDAKESVADKAHDAKESVAQKAHDAKEKVREKAHDVKETVAQKAHESKER 262

Query: 195 AMSGL---AMIYKKFLTEESVPALPRKRSSGSKTKSYTVIT 308
           A   +   A   K+  T +S  A  R ++   +  S T  T
Sbjct: 263 AKDRVREKAQELKETATHKSKNAWERVKNGAREFGSATAAT 303


>At5g10720.1 68418.m01242 sensory transduction histidine
            kinase-related similar to Sensor protein rcsC (Capsular
            synthesis regulator component C) (SP:Q56128) {Salmonella
            typhi}; sensory transduction histidine kinase slr1759,
            Synechocystis sp., PIR:S75142
          Length = 950

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 519  RLPVNSIHSATVRRTASWCFCNSMNAFVALSSTL 418
            RLP+ ++ + T+  ++  C+ N M++F++   TL
Sbjct: 905  RLPIIAMTANTLAESSEECYANGMDSFISKPVTL 938


>At1g32160.1 68414.m03956 expressed protein
          Length = 406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +2

Query: 218 LQEVLDRGKRAGPTEKAVQWIKDKI--------LHGYYMTALEDRLLVERLLNT 355
           L  VL  G   GP    VQ  K K+        ++GY++  ++ R  +ER +NT
Sbjct: 206 LSSVLGDGPAVGPLSSIVQIGKIKLGKLYAASAMYGYFLRRVDQRYQLERTMNT 259


>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 353 TSLVPYTLQSAVRMKKLYYLMSNVDDNATKAFIELQK 463
           +S  P+TL   +R  KL +L   + + ATKA   LQK
Sbjct: 482 SSTAPFTLMHEIR--KLEHLQEQLGEEATKALEVLQK 516


>At2g40430.1 68415.m04986 expressed protein identical to Protein
           At2g40430 (Swiss-Prot:O22892) [Arabidopsis thaliana];
           similar to Glioma tumor suppressor candidate region gene
           2 protein (p60) (Swiss-Prot:Q9NZM5) [Homo sapiens]
          Length = 442

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 117 AVAESEDLLHFVKERTLDKKFKIRK--EAMSGLAMIYKKFLTEESVPALPRKRSSGSKT 287
           + A SEDL H  K   L  K KI K  E +  +  I KK    + VP+   K     KT
Sbjct: 42  SAAPSEDLFHVDKSHDLPVKRKIEKHRERVLRVDSILKKNPFVQLVPSSKPKLKKSKKT 100


>At2g31250.1 68415.m03816 glutamyl-tRNA reductase, putative similar
           to HEMA2 [SP|P49294], HEMA1 [SP|P42804]
          Length = 524

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 150 VKERTLDKKFKIRKEAMSGLAMIYK 224
           V  R+ DK   IRKE  SG+ +IYK
Sbjct: 291 VMNRSEDKVAAIRKEMQSGVEIIYK 315


>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
            similarity to SPL1-Related2 protein [Arabidopsis
            thaliana] GI:6006427; contains Pfam profile PF03110: SBP
            domain
          Length = 1035

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 564  CKTLANQFL--LNGRRRRLPVNSIHSATVRRTASWCFCNSMNAF 439
            C T+A ++   ++G +R  P   IHS     T   C C  M+AF
Sbjct: 973  CATVALKYQRRVSGSQRLFPTPIIHSMLAVATVCVCVCVFMHAF 1016


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,922,446
Number of Sequences: 28952
Number of extensions: 298167
Number of successful extensions: 828
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)