Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021802X
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.48 
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    28   1.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.1  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   2.5  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   3.4  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   4.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   5.9  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    25   5.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.9  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   5.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   7.7  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 18/73 (24%), Positives = 37/73 (50%)
 Frame = +1

Query: 268 LRAGTRTPATRSASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPSSNNNSNLCTE 447
           + + + TP++ S+SS+ SP+ S S    S  S    +  S S ++    S +++S+  + 
Sbjct: 147 ITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSS 206

Query: 448 KYQVILTNDTTSS 486
           K     ++  +SS
Sbjct: 207 KSSASPSSSKSSS 219


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 64  TILDTLGQNSLWVARLLISLVEFQSRNILRAAALAEIVLFPVVLIMALFC 213
           TI+  LG++ +   RLLIS +    +      AL EI+     L++A FC
Sbjct: 429 TIIGNLGESCIQCVRLLISQITILEKRGWLLVALLEII---HALMLAAFC 475


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 285 TGSGAKRTSTYEVVVHERTHQAAVAEQRHDEYDREQHDLGERRGPEDVPRLE 130
           + S + RT    +  HERTH   +  ++H E +     L E   P +V ++E
Sbjct: 300 SASSSSRTQAKSIPSHERTHYRLI--RQHPELEHVWEKL-EEEAPREVKQIE 348


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/54 (18%), Positives = 27/54 (50%)
 Frame = -1

Query: 270 KRTSTYEVVVHERTHQAAVAEQRHDEYDREQHDLGERRGPEDVPRLELDQGDEQ 109
           +R  +  ++ ++R HQA   ++  ++++ E+H    +R           +GD++
Sbjct: 34  RRRRSQSMIANKRIHQAFQEDEGDEDWEEEEHKPKAKRRYNTRSNESFSEGDDE 87


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -1

Query: 297 CCGCTGSGAKRTSTYE---VVVHERTHQAAVAE 208
           CC C G+G +R S Y+   V++ E T QA+  E
Sbjct: 542 CCTCVGAGDRRISKYKFRSVLIDEAT-QASEPE 573


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 268 LRAGTRTPATRSASSALSPTDSRSAPGCSLN 360
           L A +RT + ++ S ++SPT + S+   SLN
Sbjct: 107 LAASSRTASYQAMSYSVSPTSTNSSVATSLN 137


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -2

Query: 401  AAHDVDGGAQH*GEFSEHPGALRESVGDNAELAERVAGVRVPAR--SVPP 258
            + HD D  +QH  E  E       S  D A LA ++ G   PA   S PP
Sbjct: 1642 SGHDSDNWSQHGDEEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVSTPP 1691


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 202 ALFCHCGLMSPFVYYYFVRGGTLRAGTRTPAT--RSASSALSPT 327
           A+F   G ++ F+  YF+ G  L+   R   T  R  SS  S T
Sbjct: 270 AIFTFLGFLTFFIVVYFIFGYALKPAARVSRTGRRVFSSPFSKT 313


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 289 PATRSASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPSSNN 426
           PA++  S++     + SAP   ++ P    PPS +  A   PS  N
Sbjct: 143 PASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYN 188


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 156 RGARRDRAVPGRTHHGVVLP 215
           R ARR R   GR  HG++LP
Sbjct: 378 REARRMRRRQGRAKHGIMLP 397


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 252 EVVVHERTHQAAVAEQRHDEYDREQHDLGERRGPED 145
           + + H+R H A    ++H+  D++ H      G ED
Sbjct: 66  DTLKHKRNHHANSNNEKHENSDKKIHTTVLASGHED 101


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 220 GLMSPFVYYYFVRGGTLRAGTRTPATR 300
           GL +PF+Y+++++    R G   P  R
Sbjct: 389 GLCTPFIYWHYLKVNKKRNGVICPEDR 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,402
Number of Sequences: 5004
Number of extensions: 44062
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)