Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021802X
(567 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5) 29 2.0
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 29 2.6
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 29 3.5
SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098) 29 3.5
SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43) 29 3.5
SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_41818| Best HMM Match : Brix (HMM E-Value=0.015) 28 6.1
SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27) 28 6.1
SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10) 27 8.1
SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2) 27 8.1
SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65) 27 8.1
SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44) 27 8.1
>SB_53803| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 217 CGLMSPFVYYYFVRGGTLRAGTRTPATRSASSAL-SPTDSRSAPGCSLNSPQC 372
CG+ SP + + G+ + G +P S + SP +P C ++SPQC
Sbjct: 477 CGIHSPQCGIHSPQCGSPQCGIHSPQCGSPQCGIHSPQCGIHSPQCGIHSPQC 529
>SB_59424| Best HMM Match : Gemini_C4 (HMM E-Value=4.5)
Length = 235
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 99 GGSSAHLPGRVPVAEHPPGRGARRDRAVPGRTHHGVVLPLRLDESVRVL 245
G ++ +P RV P R R +P R + +P R+DE++R+L
Sbjct: 162 GDETSRIPQRVDETSRIPQRVDETSR-IPQRVDEALRIPQRVDEALRIL 209
>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 210 EQRHDEYDREQHDLGERRGPEDVP 139
EQ+H+EY H + + PEDVP
Sbjct: 39 EQQHEEYSVPAHSMAQVPQPEDVP 62
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 272 APEPVHPQHVPRAPRCRRRTHAAPLGAR*TRLSAELRHRHRVLHGAARRATTT 430
AP P P + R R H AP ++A+ RH HR H A T T
Sbjct: 386 APSPPTPGTITADTRHHHRRHPAPSPLTPGTITADTRHHHR-RHPAPTPGTIT 437
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -1
Query: 255 YEVVVHERTHQAAVAEQRHDEYDREQHDLGERRGPEDVPRLELDQGDEQ 109
YEV++H ++ R DE D E + G RG D P E D GD Q
Sbjct: 772 YEVLIHNALRKSF----RSDEDDDENEEPGIIRGGHDTPE-EEDYGDFQ 815
>SB_47024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 240 HERTHQAAVAEQRHDEYDREQHDLGE--RRGPEDVPRLELDQGDEQTSHPQRILTKSIKD 67
++R H+ A ++ + +RE+ +L E RR E+ L ++G+ QR + +K+
Sbjct: 739 NKRKHEEARLQREREAREREERELRELQRREEEEHESLAREEGERAERESQREAGRDVKE 798
>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
Length = 620
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/110 (23%), Positives = 47/110 (42%)
Frame = +1
Query: 163 LAEIVLFPVVLIMALFCHCGLMSPFVYYYFVRGGTLRAGTRTPATRSASSALSPTDSRSA 342
LA + + ++L + L H L S Y+ + + +P T S S SP+ S+
Sbjct: 142 LASVFILRLLLRLRLLLHLCLFSISAYFPSPLTSSSPLTSSSPLT-SPSPLTSPSPLTSS 200
Query: 343 PGCSLNSPQC*APPSTSCAAWRRPSSNNNSNLCTEKYQVILTNDTTSSAP 492
+ +SP + P TS + S + + T + ++ TSS+P
Sbjct: 201 SPLTSSSPLTSSSPLTSSSPLTSSSPLTSPSPLTSSSPLTSSSPLTSSSP 250
>SB_3318| Best HMM Match : Xan_ur_permease (HMM E-Value=7.20267e-43)
Length = 774
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 172 IVLFPVVLIMALFCHCGL---MSPFVYYYFVRGGTL 270
IV+ V++I+ LFC G +PF +Y + GGTL
Sbjct: 665 IVVVVVIIIIILFCGIGYHASYNPFWHYLTMLGGTL 700
>SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -1
Query: 234 RTHQAAVAEQRHDEYDREQHDLGERRGPEDVPRLELDQGDEQT 106
R Q A HDE R+ HD R G ++ R D DE T
Sbjct: 92 RDSQDEAARDGHDEATRDSHDEATRDGHDEATR---DSHDEAT 131
>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
Length = 170
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 252 EVVVHERTHQAAVAEQRHDEYDREQHDLGERRGPEDVPR 136
E+ E+ +A +R + RE+ +LG+ P+ VPR
Sbjct: 21 EMYWKEKIRKAKEKRERRKKRKREEQELGDEAPPKQVPR 59
>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
Length = 197
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 192 YDREQHDLGERRGPEDVPRLELDQGDEQTSHPQRILTKSIKD 67
YD D R+ ED P + ++ DE + +R+ K ++
Sbjct: 112 YDHRMQDQPRRKSWEDTPEEDEEEDDENLTEEERLKKKEFEE 153
>SB_6855| Best HMM Match : MSF1 (HMM E-Value=1.6e-10)
Length = 289
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 289 PATRSASSALSPTDSRSAPGCSLNS 363
P TRS + AL P DS AP + S
Sbjct: 104 PRTRSCTEALPPVDSEQAPALPIAS 128
>SB_55622| Best HMM Match : AT_hook (HMM E-Value=3.2)
Length = 257
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = +3
Query: 123 GRVPVAEHPPGRGARRDRAVPGRTHHGVVLPLRLDESVRVLLLRTWRYASRRNPYTRNTF 302
GR + PP A +P R H +L L D + L S + F
Sbjct: 83 GRYTLTPPPPTTYAHFSEKIPNRIHQSDLLFLPTDRGYKYALTVVDVVESFHRWLAQRLF 142
Query: 303 RE--LRVVADGLTQRPWVLA 356
R + +A G T R WV A
Sbjct: 143 RAQYSKELASGETNREWVTA 162
>SB_19956| Best HMM Match : Vps55 (HMM E-Value=0.65)
Length = 402
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 462 YDLIFFRTQITVVVARRAAPCSTRCRWR 379
Y +I +R Q+ V+ R CS+ C WR
Sbjct: 330 YQMIKWRVQLFRVLYERIMSCSSICTWR 357
>SB_13543| Best HMM Match : DUF1020 (HMM E-Value=0.44)
Length = 850
Score = 27.5 bits (58), Expect = 8.1
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Frame = +3
Query: 123 GRVPVAEHPPGRGARRDRAVPGRTHHGVVLPLRLDESVRVLLLRTWRYASRRNPYTRNTF 302
GR + PP A +P R H +L L D + L S + F
Sbjct: 635 GRYTLTPPPPTTYAHFSEKIPNRIHQSDLLFLPTDRGYKYALTVVDVVESFHRWLAQRLF 694
Query: 303 RE--LRVVADGLTQRPWVLA 356
R + +A G T R WV A
Sbjct: 695 RAQYSKELASGETNREWVTA 714
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,090,509
Number of Sequences: 59808
Number of extensions: 386037
Number of successful extensions: 1521
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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