Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021802X
(567 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi... 31 0.41
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW... 30 1.2
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 29 2.2
At5g07030.1 68418.m00796 aspartyl protease family protein contai... 28 3.8
At5g19880.1 68418.m02366 peroxidase, putative similar to peroxid... 28 5.0
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote... 28 5.0
At3g08670.1 68416.m01007 expressed protein 28 5.0
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 28 5.0
At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin ... 27 6.6
At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin ... 27 6.6
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 8.7
At3g54400.1 68416.m06015 aspartyl protease family protein contai... 27 8.7
>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 893
Score = 31.5 bits (68), Expect = 0.41
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 185 GNSTISASAAARRMFRDWNSTREMSRR--ATHNEF*PRVSRIVKEYEAACSSANKKIGTN 12
GNS + A A++R++ WN R M RR T+ R + + K +E A S N G
Sbjct: 465 GNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGK-HEMALSVINYMYGDG 523
Query: 11 I 9
I
Sbjct: 524 I 524
>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
thaliana]
Length = 473
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 189 RTHHGVVLPLRLDESVRVLLLRTWRYASRRNPYTRNTFRELRVVADGLTQ 338
R +H + P R V +LR W + + +PY +++ + L + GLT+
Sbjct: 367 RKNHQIWRPQRGLPEKSVSVLRNWMFQNFLHPYPKDSEKHLLAIRSGLTR 416
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 29.1 bits (62), Expect = 2.2
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +1
Query: 259 GGTLRAGT-RTPATRSASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPSSNNNSN 435
G +L GT + A + L T SRS PG +L P AP + A + + N N
Sbjct: 345 GSSLVGGTSNSTAPVERNLHLDETRSRSIPGNTLEIPMFAAPEVGNFARSQSSRNVTNGN 404
Query: 436 LCTEKYQVILTNDTTSSAP 492
L V T TTS P
Sbjct: 405 L-NSASSVSRTGSTTSVPP 422
>At5g07030.1 68418.m00796 aspartyl protease family protein contains
Pfam profile:PF00026 eukaryotic aspartyl protease
Length = 439
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 304 ASSALSPTDSRSAPGCSLNSPQC*APPSTSCAA 402
+++A SP S S S ++PQC P+ +C A
Sbjct: 135 SNTAFSPAKSTSFKNVSCSAPQCKQVPNPTCGA 167
>At5g19880.1 68418.m02366 peroxidase, putative similar to peroxidase
[Lycopersicon esculentum] gi|296910|emb|CAA50597
Length = 329
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 7 LILVPIFLFALLHAASYSLTILDTLGQNSLWVARLLISLVEFQSRNILRAAA 162
L+L+PI +F +L A + T N +AR L+E SRN +R A
Sbjct: 9 LVLLPILMFGVLSNAQLTSDFYSTTCPNVTAIAR---GLIERASRNDVRLTA 57
>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase ERECTA,
Arabidopsis thaliana, EMBL:AC004484
Length = 1048
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 75 YSWSKFVVGGSSAHLPGRVPVAEHPPGRGARRDRAVPGRTHH 200
Y S F G S LPGR+P + D ++PG+ HH
Sbjct: 561 YPPSSFYPGNSKLSLPGRIPA-------DSSGDLSLPGKKHH 595
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 265 TLRAGTRTPATRSASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPS 417
+L + TP +R SA SP S P ++P +P STS +A P+
Sbjct: 239 SLSSRPSTPTSRPQLSASSPNIIASRPNSRPSTPTRRSPSSTSLSATSGPT 289
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 289 PATRSASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPSSNNNSN 435
P +SS +P DS S P + N P+ + P+ P S++N N
Sbjct: 129 PNPPESSSNPNPPDSSSNPNSNPNPPESSSNPNPPVTVPNPPESSSNPN 177
>At1g20450.2 68414.m02549 dehydrin (ERD10) identical to dehydrin
ERD10 (Low-temperature-induced protein LTI45)
[Arabidopsis thaliana] SWISS-PROT:P42759
Length = 259
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 276 GAKRTSTYEVVVHERTHQAAVAEQRHDEYDR--EQHDLGERRGPEDVP 139
G K+ + + E H V E+ DR E+ LGE+ G +DVP
Sbjct: 118 GEKKKKEKKKKIVEGDHVKTVEEENQGVMDRIKEKFPLGEKPGGDDVP 165
>At1g20450.1 68414.m02548 dehydrin (ERD10) identical to dehydrin
ERD10 (Low-temperature-induced protein LTI45)
[Arabidopsis thaliana] SWISS-PROT:P42759
Length = 260
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -1
Query: 276 GAKRTSTYEVVVHERTHQAAVAEQRHDEYDR--EQHDLGERRGPEDVP 139
G K+ + + E H V E+ DR E+ LGE+ G +DVP
Sbjct: 119 GEKKKKEKKKKIVEGDHVKTVEEENQGVMDRIKEKFPLGEKPGGDDVP 166
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 246 VVHERTHQAAVAEQRHDEYDREQHDLGERR 157
+ ER + + RH + DR+QHDL + R
Sbjct: 888 LTRERVRDHDLDKDRHRDRDRQQHDLDKDR 917
>At3g54400.1 68416.m06015 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 425
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +1
Query: 301 SASSALSPTDSRSAPGCSLNSPQC*APPSTSCAAWRRPSSNNNSNLCTEKYQVILTNDTT 480
S+S P+ S S+ +PQC P+ SC + S N + LT DT
Sbjct: 123 SSSVLFDPSKSSSSRTLQCEAPQCKQAPNPSCTVSK--SCGFNMTYGGSTIEAYLTQDTL 180
Query: 481 SSA 489
+ A
Sbjct: 181 TLA 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,102,224
Number of Sequences: 28952
Number of extensions: 246212
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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