Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021801
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.86 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   3.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   3.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 405 TNINVQVSSHALSALAPGALITPTPFLPAESTSMLS 298
           TN+   +++   S ++      P   LPA STS+ S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTSINS 868


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 590  TKGSNPMMFMPKAYILVATYRPTLPRPRWR-GSC 492
            TKGS P++     +I VAT   TL    W  G C
Sbjct: 1456 TKGSKPIIPEAARFIEVATNSITLHLNAWSDGGC 1489


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 162 KISKEELLMEIPNHDALVVRSATQVTKEVLDQA*SLRWSVVLELVWTTSTSTPP 323
           K+SK E +             AT VT   +DQ+  ++    + L    S S PP
Sbjct: 713 KVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPP 766


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 296 HQLQHDRPP*ASRLVQHLFGHLS 228
           H   HD PP  S  +  LF H S
Sbjct: 133 HLAMHDYPPLVSGALHLLFRHFS 155


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -2

Query: 296 HQLQHDRPP*ASRLVQHLFGHLS 228
           H   HD PP  S  +  LF H S
Sbjct: 101 HLAMHDYPPLVSGALHLLFRHFS 123


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 402 WFWLATWSQLPL 437
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 402 WFWLATWSQLPL 437
           WFW+  ++ LPL
Sbjct: 179 WFWVTPFTVLPL 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,776
Number of Sequences: 438
Number of extensions: 4208
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)