Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021800X
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    29   0.17 
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    25   2.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   2.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   3.7  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    23   8.5  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 37  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTS*RDLQKAGKELNSDQKV 210
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 211 AVAKYDEVAQTL 246
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +1

Query: 58  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDE 231
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 232 VAQ 240
           V Q
Sbjct: 193 VTQ 195


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 221 NMMKLPKPLNLQRSLKASYCYRN 289
           +++KLP+P++    L  S C+RN
Sbjct: 761 DILKLPQPISTWNKLLDSECHRN 783


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 20/68 (29%), Positives = 38/68 (55%)
 Frame = +1

Query: 34  AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVA 213
           A N+K+ + + SE+ +  I ++   ++ + RN   R+ KL    DL+K+ K+     K+ 
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586

Query: 214 VAKYDEVA 237
           V K +E+A
Sbjct: 587 VEKVEEIA 594


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 265 ERSLQIQGFGQLHHI*PLQLFDQNLALF 182
           E  L++Q   Q   + PLQL D+N   F
Sbjct: 68  EHGLKVQTVAQTEGVSPLQLCDRNSKRF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,720
Number of Sequences: 5004
Number of extensions: 18474
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)