Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021800X
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    30   0.45 
03_03_0114 - 14554964-14555136,14556317-14556474,14557413-145574...    27   3.2  
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    27   4.2  
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197...    26   5.6  
02_04_0511 - 23560398-23560457,23560638-23560708,23560852-23561182     26   7.4  
10_08_0748 - 20277623-20277736,20277956-20279425                       25   9.7  

>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +1

Query: 31  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQK--AGKELNSDQ 204
           S  +   E P + E++  P  + MT+ E++    EKRK+ L    + +K    KEL + Q
Sbjct: 224 SEVDKDKESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQ 283

Query: 205 KVAVAKYDE 231
           +++V K +E
Sbjct: 284 QLSVKKANE 292


>03_03_0114 -
           14554964-14555136,14556317-14556474,14557413-14557486,
           14557589-14557703,14557818-14558054,14558157-14558233
          Length = 277

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +1

Query: 46  KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGK 186
           K     SS    T I ++   IE+K+RN+E+ ++     ++ + AGK
Sbjct: 146 KKNSEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQEKRLAGK 192


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 49  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELN 195
           S K     +K  P R  M  +EH+  N+EK      S   ++K+ + ++
Sbjct: 290 SRKSTDRREKSRPTRDRMRGVEHRYSNVEKTDKLKFSFDHMEKSRRSID 338


>10_08_0426 -
           17817975-17818582,17819068-17819209,17819648-17819745,
           17820070-17821897,17822331-17822738,17822891-17822943,
           17823461-17823877,17824401-17824605
          Length = 1252

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 49  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAK 222
           S +  S    D P+  I+T + HK R   + K    S      A K+L+ D +V V +
Sbjct: 475 SYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDVAIKKLSDDSEVQVVE 532


>02_04_0511 - 23560398-23560457,23560638-23560708,23560852-23561182
          Length = 153

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 307 ASRSEEISIAVTCFERSLQIQGFGQLHHI*PLQLFDQNLALFQLSAGHAMMLVYSCV 137
           + RS ++  A+     + ++   GQ   I  L L+D NL L Q  +    +L+  C+
Sbjct: 31  SQRSGQVKGAIIQMHMTSELDKLGQTKLI-LLLLYDNNLQLHQYKSARLCLLLDGCI 86


>10_08_0748 - 20277623-20277736,20277956-20279425
          Length = 527

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 25  MPSAANAKSEKPASSEDKDTPIRQIMTIIE 114
           MP+A++     P+SS    TP+R + +  E
Sbjct: 73  MPNASSVNGSSPSSSSPPPTPVRPMRSADE 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,997,300
Number of Sequences: 37544
Number of extensions: 104763
Number of successful extensions: 256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)