Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021800X
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-10
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.12 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 31   0.20 
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   29   0.82 
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   1.4  
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.5  
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)        27   3.3  
SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)                  27   3.3  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.3  
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)                      26   5.8  
SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05)               26   5.8  
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)                   26   7.6  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 31/78 (39%), Positives = 47/78 (60%)
 Frame = +1

Query: 25  MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQ 204
           MPSA++  S+  A  +  D   +  + ++E K+RNLEKRK KL   +    +G+ELN+DQ
Sbjct: 1   MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59

Query: 205 KVAVAKYDEVAQTLEFAE 258
           K A+A  D V   L+ A+
Sbjct: 60  KAAIANLDVVEMNLDMAK 77


>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 112 EHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDEVAQTLEFAEI 261
           + KIRNL+K+  ++   +  QKAGK+L  +Q   +   D + + ++  EI
Sbjct: 65  DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIKALEI 114


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 76  KDTPIRQIMTIIEHKIRNLEKRKSKLTS-*RDLQKAGKELNSDQKVAVAK 222
           KD+  ++  ++ E KIR L+KR S+L S  R L+   K+L  D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 49   SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTS*RDLQKAGKELNSDQKVAVAKY 225
            SE  A  ++KD  + +   + + KI+  +  +KSK     +L KAGK + +   V   K 
Sbjct: 861  SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918

Query: 226  DEVAQTLE 249
             + AQ+L+
Sbjct: 919  ADAAQSLQ 926


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 49   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVA 213
            +E+P +        +   T++++   + +  ++  T  RD+Q+ GKE NSD  ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 49  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKR--KSKLTS*RDLQKAGKELNSDQKVAVAK 222
           SE   S +D+   + +    +E ++  L      SKL +  DL  A  +L  ++ V   +
Sbjct: 587 SENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVRSRQ 646

Query: 223 YDEVAQTLE 249
           YDE    L+
Sbjct: 647 YDERIHLLQ 655


>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
          Length = 1128

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RD 168
           ED++  IRQ+  IIE K  ++E++  +L   RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879


>SB_40917| Best HMM Match : Filament (HMM E-Value=1.7)
          Length = 421

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +1

Query: 46  KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVA---V 216
           + ++PA S   +T  ++++  + H    LEK+ + L     L   G++L  +Q ++    
Sbjct: 15  RDQRPAPSGPHETSTKRLLAGLSHSKHKLEKQIANLL----LSAFGEQLVVNQGISDEMW 70

Query: 217 AKYDEVAQTLE 249
           A Y+++A  LE
Sbjct: 71  ANYEDMASMLE 81


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +1

Query: 40  NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 141
           NA     A  +  + P + + T ++H++ NL+K+
Sbjct: 727 NASHNPSADLQSSNQPNKTVSTAVQHRVLNLDKK 760


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 22   RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAG-KELNS 198
            ++PS  N    K    + KD+ IR ++T     I   E+++      +D Q  G K+ N 
Sbjct: 1143 KLPSKENMSDGKDNLEDGKDSSIRGVLTDYNISIPAQERKRKLGRPRKDEQNLGSKKKNG 1202

Query: 199  DQKVA 213
            + + A
Sbjct: 1203 ESQTA 1207


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 25  MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 141
           +P+ AN +   P+S  D D+ +   +T +  +++N E +
Sbjct: 553 IPTLANQRRHGPSSRLDNDSDVLSQLTALRKQLKNEENK 591


>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 31  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKS 147
           +AA+AK+ KP    D D  I +  T  EHK R +E  K+
Sbjct: 246 AAASAKANKPKYEYDSDEEIDEEGT-WEHKRRKMEMWKT 283


>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
          Length = 2110

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +1

Query: 70  EDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAK--YDEVAQT 243
           E +D PI +I ++++    N+EK   K    +D ++ GK     +K    K   D+  QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267

Query: 244 L 246
           +
Sbjct: 268 M 268


>SB_14943| Best HMM Match : CRAL_TRIO (HMM E-Value=8e-05)
          Length = 391

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 37  ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSK 150
           A +KS+KP SS  K+TP++ + +    +  + EK+ ++
Sbjct: 256 AESKSDKP-SSPVKETPVKNVPSTASEESTDEEKKSTE 292


>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
          Length = 766

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 109 IEHKIRNLEKRKSKLTS*RDLQKAGKE 189
           IE KIR+LE+++       D++ AG+E
Sbjct: 490 IERKIRSLERKQLSYLKKEDIELAGEE 516


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 112  EHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAK 222
            + K+ NL+ + SKL +  + Q+A K++ +  +V+  K
Sbjct: 894  DDKVNNLQAKISKLEADMNEQQASKDITAQDRVSELK 930


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,134,428
Number of Sequences: 59808
Number of extensions: 123908
Number of successful extensions: 298
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)