Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021800X
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55990.1 68416.m06221 expressed protein contains Pfam profile... 31 0.22
At5g17910.1 68418.m02100 expressed protein 30 0.39
At1g11400.2 68414.m01310 expressed protein 29 0.67
At1g11400.1 68414.m01309 expressed protein 29 0.67
At1g71150.1 68414.m08210 expressed protein ; expression support... 28 1.6
At5g27330.1 68418.m03263 expressed protein 27 2.1
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 27 2.7
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 3.6
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 26 4.8
At1g21740.1 68414.m02721 expressed protein contains Pfam domains... 26 4.8
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 25 8.3
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 25 8.3
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ... 25 8.3
>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
PF03005: Arabidopsis proteins of unknown function
Length = 487
Score = 30.7 bits (66), Expect = 0.22
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKY 225
+ KP D+ TPI +I T+ ++ I+N + + + + +Q + K++ + V+K
Sbjct: 56 TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115
Query: 226 DEVAQTLEFA 255
+EV + FA
Sbjct: 116 EEVKKIELFA 125
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 91 RQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDEVAQTLE 249
RQ+ + E K+ ++ +S T D +K E N+D++ +AK D V+ E
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVSDNDE 576
>At1g11400.2 68414.m01310 expressed protein
Length = 204
Score = 29.1 bits (62), Expect = 0.67
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 109 IEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDEVAQTLEFAE 258
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ E
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALE 200
>At1g11400.1 68414.m01309 expressed protein
Length = 204
Score = 29.1 bits (62), Expect = 0.67
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 109 IEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDEVAQTLEFAE 258
+E +IR L K+K +LT + + A ++LN +Q +K +E Q L+ E
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQELKALE 200
>At1g71150.1 68414.m08210 expressed protein ; expression supported
by MPSS
Length = 351
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 37 ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 141
++ KS K +SSE R++ ++IEH + L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 73 DKDTPIRQIMTIIEHKIRNLEKRK---SKLTS*RDLQKAGKELNSDQ 204
D++T IR + IR LE + S++ RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +1
Query: 82 TPIRQIMTIIEHKIRNLEKRKSKLTS 159
T ++Q+ T IEH + L++RKS+L S
Sbjct: 412 TELKQLKTKIEHCEKELKERKSQLMS 437
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 52 EKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDE 231
+K S E ++T + KI +L T RDL++ KE+ S+ ++A + E
Sbjct: 414 KKGVSFELEETTSTSSFDVESSKISSLSSLSIHAT--RDLREVVKEIKSEFEIASSCGKE 471
Query: 232 VAQTLEFAEI 261
VA LE ++
Sbjct: 472 VALLLEVGKL 481
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 5 KVVASEGCLQQLMQNLKSRPLRRIRIHQFDKL*RLLSIK 121
K + SEG L+ +LKS PL + +H+ D++ + L IK
Sbjct: 249 KNLLSEGTLKP--SDLKSMPLEELPVHEEDQVLKNLFIK 285
>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 953
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 55 KPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQKVAVAKYDEV 234
K S + D + + KI +L T RDL++ KE+ S+ +VA + EV
Sbjct: 463 KKGVSFELDENVTTSFDVESSKISSLSALSVHAT--RDLREVVKEIKSEFEVASSHGKEV 520
Query: 235 AQTLEFAEI 261
A LE +++
Sbjct: 521 AVLLEVSKL 529
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/79 (20%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +1
Query: 28 PSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTS*RDLQKAGKELNSDQK 207
PS ++ EKPA+S K+ P+++ + +++ S + +++ A + ++K
Sbjct: 45 PSDPSSTEEKPAASPAKEVPVKR-PEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEK 103
Query: 208 VAVAK--YDEVAQTLEFAE 258
+ K ++ +A + E E
Sbjct: 104 YILEKTQFEAIASSSEIRE 122
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 97 IMTIIEHKIRNLEKRKSKLTS*RDLQKAGK--ELNSDQKVAVAKYDEVA 237
I+ ++E N +K LTS D + G+ +LN ++ +AK+D +A
Sbjct: 268 IVDLVERCRSNQKKLMQMLTSTGDDELLGRGLDLNDSLQILLAKHDAIA 316
>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 907
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 244 GFGQLHHI*PLQLFDQNLALFQLSAGHAMMLVYSCVFPNYEF 119
G G L H+ L L D ++ S G+ M+L+Y + + EF
Sbjct: 604 GIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEF 645
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,816,201
Number of Sequences: 28952
Number of extensions: 91913
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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