Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021799
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 30 0.27
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 29 0.81
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 28 1.4
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 2.0
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.3
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 27 3.3
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 26 4.3
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 26 4.3
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 5.7
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 26 5.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.7
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 25 7.6
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 10.0
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 30.3 bits (65), Expect = 0.27
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 447 KSWYKAF*RTIAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSN 626
KSW ++ I++ + + ++ + K DT++ +++T ++SL S
Sbjct: 115 KSWSRSLSNNISLSQSSSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSM 174
Query: 627 GPCPATPPP 653
P TPPP
Sbjct: 175 PPSTPTPPP 183
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 452 LV*GILKNYRCAIRS-RRHIKTELSKSER 535
LV G +++YR + RRH+K E+ KS+R
Sbjct: 62 LVNGRIRSYRSTLEEWRRHLKEEIGKSDR 90
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 134 DLNEKRTMVVKGDMHIGGVMLKLTESFGKE 223
++++ T+ GD HIG ++ K E GKE
Sbjct: 174 EISQVATISANGDTHIGELLAKAMERVGKE 203
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 473 NYRCAIRSRRHIKTELSKSERS*KNKEHSGSRHEYIHSSD 592
N++ I +HI +L +S +N E G+R E ++SD
Sbjct: 128 NHKLEIHVYKHILPDLPQSSEVDRNSETEGTREENSNTSD 167
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect(2) = 2.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 621 SNGPCPATPPPPRSLSA 671
SN P PPPPRS +A
Sbjct: 332 SNSSLPPPPPPPRSNAA 348
Score = 20.6 bits (41), Expect(2) = 2.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 645 PPPPRSLSAT 674
PPPPRS +T
Sbjct: 363 PPPPRSAPST 372
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = -2
Query: 413 IEKSILQSMNLKSGSWILSGLCMGVKCRAASA*TPYWSRVCFGLESHLFLVGHR 252
I+KS+ + + LK+ W++ LC+ + T +S + G+ + L +VG++
Sbjct: 36 IDKSLNRKLKLKTDLWVMPLLCLISAFQYMDKSTSNYSSI-MGIRTDLNMVGNQ 88
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 86 GEIVGDGSWNLTIYVTDLNEKRTMVVK 166
GEI+G+GS++ + T+ + KR +K
Sbjct: 102 GEILGEGSYSTVLTATENSTKREYAIK 128
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 277 LSRPKHTLDQYGVHADAA-LHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFS 426
LSR TL + V+ + A + P+H LR +L DL DC D TFS
Sbjct: 300 LSRDYLTLKIWDVNMEKAPVKTIPLHDVLRSKLCDLYENDCIFDKFECTFS 350
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -2
Query: 458 IPRFLHSCITALNVSIEKSILQSMNLKSGSWILSGLCM 345
IP+ +CI+ +V I S+L ++ + G+ ++ G +
Sbjct: 327 IPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSL 364
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 388 IDCKIDFSIDTFSAVIQLCKNLGIRHSEELSLCY 489
+D ++ D+ +I++ +LG EE+S CY
Sbjct: 984 LDAQVQSCADSTELLIKVLSDLGSTEDEEISDCY 1017
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Frame = +2
Query: 92 IVGDGSWNLTIYVTDLNEKRT-----MVVKGDMHIGGVMLKLT------ESFGKEFKKDW 238
+V D S NL + D + +V +GD HIG V+ +T + E+ D
Sbjct: 1270 VVADTSGNLRLLAYDPENPESHSGERLVTRGDFHIGNVITAMTILPKEKKHQNAEYGYDT 1329
Query: 239 SDHALCGRLETNGSPDQNTPWTSTEFTR 322
D C + ++G P + + R
Sbjct: 1330 GDDFSCVMVNSDGGLQMLVPISDRVYRR 1357
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 436 QLCKNLGI-RHSEELSLCYPLEASHQ 510
+LC +LG E+++CYPL HQ
Sbjct: 256 RLCGSLGADTFYSEMAMCYPLMQGHQ 281
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 95 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKK 232
+G G++++++ + GD H+GG +L F +EFK+
Sbjct: 198 LGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKR 245
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 513 QNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
Q++ ++K+ K TQ+ N +A+ GSS ++ R+N PP
Sbjct: 343 QHFNSMKKNKNNSPTQSE--NVSASASSGSSPTVSRANSVIDVDAYPP 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,054
Number of Sequences: 5004
Number of extensions: 52111
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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