Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021799
(675 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799... 34 0.090
11_01_0566 + 4466318-4466695,4466736-4466909,4466941-4467038,446... 32 0.48
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 31 0.64
03_01_0007 + 79202-79433,80426-80713,80790-80870,81090-81191,816... 31 1.1
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 30 1.5
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 30 1.5
03_01_0574 + 4243019-4244284 29 3.4
11_06_0692 + 26327487-26328509 29 4.5
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 28 5.9
09_06_0254 - 21872694-21872873,21872992-21873046,21873548-218736... 28 7.8
07_01_0474 + 3579653-3579821,3580407-3580744 28 7.8
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84... 28 7.8
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 7.8
10_08_0534 + 18595520-18595828,18595917-18597149 25 8.8
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 24 8.9
>12_02_0702 -
22278513-22278751,22279054-22279889,22279932-22279975,
22280350-22280463
Length = 410
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +3
Query: 477 IAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
+ ++ A+ + ++ Q L++ + I+ ++ T IAA R ++ L S+ P P PPPP
Sbjct: 95 LELMEAKCMQEEKFNQILQKLEEIEACRSKATEVTIAAIRTTTAILKASSSPTPMAPPPP 154
>11_01_0566 +
4466318-4466695,4466736-4466909,4466941-4467038,
4467211-4467346
Length = 261
Score = 31.9 bits (69), Expect = 0.48
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 528 LKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
L++ I+ ++ T IAA + +S L ++ P P PPPP
Sbjct: 29 LEKLDEIEANRSKATEETIAANKATSTILKAASSPTPMAPPPP 71
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 513 QNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
QN+Q L+E + ++ + +T IAA R ++ L ++ P PPPP
Sbjct: 78 QNFQKLEEIEARRSKASEET---IAAIRATTAILKAASSSTPMAPPPP 122
>03_01_0007 +
79202-79433,80426-80713,80790-80870,81090-81191,
81677-81813
Length = 279
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 585 AATRGSSNSLDRSNGPCPATPPP 653
AA+ +S S DR N P PA PPP
Sbjct: 11 AASSSASASADRLNSPTPAPPPP 33
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 253 LWPTRNKWLSRPKHT-LDQYGVHADAALHFTPMHKPLRIQLPDL 381
++ R + +S+P +T + Q+ H AL F P HK R+ DL
Sbjct: 1539 IFEARMQAMSKPTYTAITQHAKHGKPALVFVPTHKHARLTAVDL 1582
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 579 FIAATRGSSNSLDRSNGPCPATPPPPRSLS 668
F A+ G+ LD S PCPATPPPP L+
Sbjct: 651 FACASGGAQ--LDHSL-PCPATPPPPYQLN 677
>03_01_0574 + 4243019-4244284
Length = 421
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 68 VKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGV 190
V L DG+ + SWN VT+L EK+T + GD + G+
Sbjct: 162 VVRLEDGDYLELVSWNPNWAVTEL-EKKTAALTGDANANGI 201
>11_06_0692 + 26327487-26328509
Length = 340
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 655 GGGGVAGHGPFDLSKLFEEPLVAAMN 578
GGGG G FD S F P AAM+
Sbjct: 66 GGGGCLGDFDFDFSSRFPSPSAAAMS 91
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 68 VKMLADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDW 238
V DG + GS + T+ DLN + + + +L L S G+ K+W
Sbjct: 121 VSFSPDGRCLASGSGDTTVRFWDLNTQTPLFTCKGGSLNSCILVLISSVGQSCHKNW 177
>09_06_0254 -
21872694-21872873,21872992-21873046,21873548-21873600,
21873683-21873759,21873842-21873965,21874050-21874175,
21874861-21875011,21875112-21875220,21875791-21875854,
21876334-21876450
Length = 351
Score = 27.9 bits (59), Expect = 7.8
Identities = 7/24 (29%), Positives = 17/24 (70%)
Frame = -1
Query: 306 LVQGVFWSGEPFVSSRPQRAWSDQ 235
+++G+ WS +P S +P+ W+++
Sbjct: 124 MLEGIIWSPKPGESDKPEDTWTEE 147
>07_01_0474 + 3579653-3579821,3580407-3580744
Length = 168
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 624 NGPCPATPPPPRSLSAT 674
N P PA+PPPP S S++
Sbjct: 127 NAPAPASPPPPPSSSSS 143
>02_01_0112 -
839048-839552,839638-839720,839828-839982,840078-840557,
840855-841097,841189-841403,841489-841756,842477-842525
Length = 665
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 95 VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVML--KLTESFGKEFKKDWS 241
+G G+++++I D + GD H+GG ++ E F K KK +S
Sbjct: 229 LGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYS 279
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 588 ATRGSSNSLDRSNGPCPATPPPP 656
A S+ ++DR+ P P +PPPP
Sbjct: 63 ARESSATAVDRTPPPTPPSPPPP 85
>10_08_0534 + 18595520-18595828,18595917-18597149
Length = 513
Score = 25.0 bits (52), Expect(2) = 8.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 594 RGSSNSLDRSNGPCPATPPPP 656
RG S S + + P P PPPP
Sbjct: 21 RGLSVSAEETVSPSPPPPPPP 41
Score = 21.0 bits (42), Expect(2) = 8.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 630 PCPATPPPPR 659
P P PPPPR
Sbjct: 36 PPPPPPPPPR 45
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 23.8 bits (49), Expect(2) = 8.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 561 APDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
AP A TR R P P PPPP
Sbjct: 12 APSAARLAAPTRTRPPPRTRVRPPPPPAPPPP 43
Score = 22.2 bits (45), Expect(2) = 8.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 630 PCPATPPPPR 659
P P PPPPR
Sbjct: 38 PAPPPPPPPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,704
Number of Sequences: 37544
Number of extensions: 373233
Number of successful extensions: 1805
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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