Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021799
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)                      105   3e-23
SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)                       105   3e-23
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)                       29   2.6  
SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)              29   4.5  
SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7)                      28   7.9  
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_36075| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  105 bits (252), Expect = 3e-23
 Identities = 46/79 (58%), Positives = 57/79 (72%)
 Frame = +1

Query: 256 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 435
           WP R +WL +P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +DFS   F AV 
Sbjct: 57  WPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSMDFSKKVFVAVQ 116

Query: 436 QLCKNLGIRHSEELSLCYP 492
           +LC  LGIRH EELSL  P
Sbjct: 117 ELCAELGIRHPEELSLMKP 135



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 107 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHAL 253
           +WNL++++T L+ ++ + V G  HIG +ML L E  G +   DWSDH L
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGL 55


>SB_9942| Best HMM Match : CCD (HMM E-Value=4.3)
          Length = 146

 Score =  105 bits (252), Expect = 3e-23
 Identities = 46/79 (58%), Positives = 57/79 (72%)
 Frame = +1

Query: 256 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 435
           WP R +WL +P+ TLD  GV  DA LHFTP+HK +R+QLPDL+F++  +DFS   F AV 
Sbjct: 57  WPQRRQWLLKPRITLDTCGVQGDAKLHFTPIHKKVRVQLPDLQFVELSMDFSKKVFVAVQ 116

Query: 436 QLCKNLGIRHSEELSLCYP 492
           +LC  LGIRH EELSL  P
Sbjct: 117 ELCAELGIRHPEELSLMKP 135



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 107 SWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHAL 253
           +WNL++++T L+ ++ + V G  HIG +ML L E  G +   DWSDH L
Sbjct: 9   NWNLSVFITSLSTEKPVEVTGQTHIGKLMLDLVE--GLDISADWSDHGL 55


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 504  TSKQNYQNLKEAKRIKNTQ-APDTNTFIAATRGSSNSLD----RSNGPCPATPPPPRSLS 668
            T  Q   ++  +  IKN + AP  NT   ++RG S S      RS    P+TPPPP   S
Sbjct: 879  TQPQAASHVYRSVMIKNRRRAPIPNTGSESSRGDSGSTRTSPIRSTSTIPSTPPPPGGSS 938

Query: 669  AT 674
            +T
Sbjct: 939  ST 940


>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
          Length = 401

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 522 QNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 653
           + L    R++++  P T++  A T     +    N P PATPPP
Sbjct: 204 KRLHRPTRVQSSPGPRTSSSAAETPNIRPATAVPNAPPPATPPP 247


>SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)
          Length = 241

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 83  DGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDH 247
           DGEI G G      + +  NE     VKG++H  GVM K  +  G +++ +W ++
Sbjct: 13  DGEIQGHG---FRYWASSRNEYTGQFVKGELHGNGVM-KYGD--GSQYEGEWMNN 61


>SB_29794| Best HMM Match : DRAT (HMM E-Value=5.7)
          Length = 368

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 251 LCGRLETNGSPDQNTPWTSTEFTRTPPYTSRPCTNH*ESSCRT*DSSTAKLTSQL 415
           L  R  +   PDQN PW+       P  TS P       S RT   + + L +QL
Sbjct: 81  LTTRSNSTTRPDQNNPWSRCGLLSCPTTTS-PAKRRKTPSWRTLAPALSPLATQL 134


>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 296 PWTSTEF-TRTPPYTSRPCT 352
           PW++    TR PP ++RPCT
Sbjct: 879 PWSNRHLDTRAPPISARPCT 898


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,301,250
Number of Sequences: 59808
Number of extensions: 404786
Number of successful extensions: 3311
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)