Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021799
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical pr...   102   2e-22
AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.   102   2e-22
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   0.41 
AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF003139-5|AAM15577.2|  177|Caenorhabditis elegans Hypothetical ...    28   5.3  
U39646-4|AAA80370.1|  215|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like se...    28   7.0  
AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical...    28   7.0  
U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z75530-6|CAA99790.1|  720|Caenorhabditis elegans Hypothetical
           protein C47E8.7 protein.
          Length = 720

 Score =  102 bits (245), Expect = 2e-22
 Identities = 42/76 (55%), Positives = 58/76 (76%)
 Frame = +1

Query: 256 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 435
           WP + +WL   + TLDQ G+ A+  L FTPMHK  RIQLPD++ ID ++DFS+++F A  
Sbjct: 62  WPEKRRWLQHTRSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDARVDFSVNSFKATK 121

Query: 436 QLCKNLGIRHSEELSL 483
           +LC++LGIR+SEELSL
Sbjct: 122 KLCRDLGIRYSEELSL 137



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/59 (45%), Positives = 41/59 (69%)
 Frame = +2

Query: 77  LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHAL 253
           L +G  + DG W L I VTDLN +R++ V G++++GG+ML+L      + ++DWSDHAL
Sbjct: 4   LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSEC--DVERDWSDHAL 60


>AF217185-1|AAF20162.1|  720|Caenorhabditis elegans UNC-112 protein.
          Length = 720

 Score =  102 bits (245), Expect = 2e-22
 Identities = 42/76 (55%), Positives = 58/76 (76%)
 Frame = +1

Query: 256 WPTRNKWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVI 435
           WP + +WL   + TLDQ G+ A+  L FTPMHK  RIQLPD++ ID ++DFS+++F A  
Sbjct: 62  WPEKRRWLQHTRSTLDQNGITAETQLEFTPMHKEARIQLPDMQMIDARVDFSVNSFKATK 121

Query: 436 QLCKNLGIRHSEELSL 483
           +LC++LGIR+SEELSL
Sbjct: 122 KLCRDLGIRYSEELSL 137



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 27/59 (45%), Positives = 41/59 (69%)
 Frame = +2

Query: 77  LADGEIVGDGSWNLTIYVTDLNEKRTMVVKGDMHIGGVMLKLTESFGKEFKKDWSDHAL 253
           L +G  + DG W L I VTDLN +R++ V G++++GG+ML+L      + ++DWSDHAL
Sbjct: 4   LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSEC--DVERDWSDHAL 60


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 28.7 bits (61), Expect(2) = 0.41
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 522  QNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
            +N  + +  +     +TN  I A    S+S   S    P+ PPPP
Sbjct: 1298 KNSSKKRNNRRGNRRNTNEHIQANHEDSDSFSTSRSSSPSPPPPP 1342



 Score = 21.8 bits (44), Expect(2) = 0.41
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 630  PCPATPPPPRSLS 668
            P P  PPPP ++S
Sbjct: 1354 PVPPPPPPPPTMS 1366


>AF003389-4|AAN63407.1|  598|Caenorhabditis elegans Hypothetical
           protein F23H11.4b protein.
          Length = 598

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 504 TSKQNYQNLKEAKRIK-----NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
           T+ QN+ N+    R+      ++Q P    FI  + G+S S  + + P P  PPPP
Sbjct: 37  TAVQNFGNVLGELRLNLNETISSQDPPGIGFIEVSPGTSMSPPQRHAPPPPRPPPP 92


>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
           protein F23H11.4a protein.
          Length = 1003

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 504 TSKQNYQNLKEAKRIK-----NTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
           T+ QN+ N+    R+      ++Q P    FI  + G+S S  + + P P  PPPP
Sbjct: 37  TAVQNFGNVLGELRLNLNETISSQDPPGIGFIEVSPGTSMSPPQRHAPPPPRPPPP 92


>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 74   MLADGEIVGDGSWNLTIYVTDLNEK 148
            + A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268


>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
            C14B4.2 protein.
          Length = 1776

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 74   MLADGEIVGDGSWNLTIYVTDLNEK 148
            + A G ++GD S NLTI+ T+++ K
Sbjct: 1244 LTASGHVLGDSSTNLTIHSTNIHSK 1268


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 489 SARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRS 662
           +AR       ++ LK  K + N ++  +   +  + GSS++ +  NG  PA  PP  S
Sbjct: 27  NARNALLGDIHKGLKLKKTVTNDRSAPSVGKVVGSSGSSSNGNSGNGNGPAAKPPQMS 84


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 489 SARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPPRS 662
           +AR       ++ LK  K + N ++  +   +  + GSS++ +  NG  PA  PP  S
Sbjct: 27  NARNALLGDIHKGLKLKKTVTNDRSAPSVGKVVGSSGSSSNGNSGNGNGPAAKPPQMS 84


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 278 SPDQNTPWTSTEFTRTPPYTSRPCTNH 358
           S  ++  W+  +  R PP  SRPC  H
Sbjct: 147 STGKSVQWSQCDARRRPPEKSRPCNQH 173


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 278 SPDQNTPWTSTEFTRTPPYTSRPCTNH 358
           S  ++  W+  +  R PP  SRPC  H
Sbjct: 481 STGKSVQWSQCDARRRPPEKSRPCNQH 507


>AF003139-5|AAM15577.2|  177|Caenorhabditis elegans Hypothetical
           protein F53G12.8 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 477 IAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
           + +L   G   K N +N+KEA ++ +   P T+T    T+      + + G  P  P  P
Sbjct: 36  LPILLCGGKKKKAN-KNVKEASKVNSLVPPSTSTDPLKTKEKEMKKEEAPG-APDAPTKP 93

Query: 657 RS 662
           +S
Sbjct: 94  KS 95


>U39646-4|AAA80370.1|  215|Caenorhabditis elegans Hypothetical
           protein F47B7.6 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/57 (33%), Positives = 22/57 (38%)
 Frame = +3

Query: 486 LSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPPP 656
           LS+    SK         K  +  QA     F          L RS+ PC ATPPPP
Sbjct: 49  LSSTAEASKDQLVQHGSTKAHERRQASGRGGFAQGYPTQLRRLPRSS-PCYATPPPP 104


>AY741200-1|AAU89102.1|  596|Caenorhabditis elegans STE20-like
           serine/threonine kinase protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = +3

Query: 474 TIAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 653
           T    SA    +  +  N        +T    T TF   T  S  S    +G  P+ PPP
Sbjct: 12  TTTTSSAASAAAAHSAANASTITSEYSTTQTTTGTFNTDTLSSIGSTSTLHGSQPSQPPP 71

Query: 654 P 656
           P
Sbjct: 72  P 72



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 474 TIAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 653
           T +  SA    S  N   +        T     NT   ++ GS+++L  S    P  PPP
Sbjct: 15  TSSAASAAAAHSAANASTITSEYSTTQTTTGTFNTDTLSSIGSTSTLHGSQPSQPPPPPP 74

Query: 654 PR 659
           P+
Sbjct: 75  PQ 76


>AL132898-15|CAC14417.2|  596|Caenorhabditis elegans Hypothetical
           protein Y59A8B.23 protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = +3

Query: 474 TIAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 653
           T    SA    +  +  N        +T    T TF   T  S  S    +G  P+ PPP
Sbjct: 12  TTTTSSAASAAAAHSAANASTITSEYSTTQTTTGTFNTDTLSSIGSTSTLHGSQPSQPPP 71

Query: 654 P 656
           P
Sbjct: 72  P 72



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 474 TIAVLSARGVTSKQNYQNLKEAKRIKNTQAPDTNTFIAATRGSSNSLDRSNGPCPATPPP 653
           T +  SA    S  N   +        T     NT   ++ GS+++L  S    P  PPP
Sbjct: 15  TSSAASAAAAHSAANASTITSEYSTTQTTTGTFNTDTLSSIGSTSTLHGSQPSQPPPPPP 74

Query: 654 PR 659
           P+
Sbjct: 75  PQ 76


>U41030-4|AAA82364.1|  547|Caenorhabditis elegans Hypothetical
           protein C44C1.4a protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 92  IVGDGSWNLTIYVTDLNEKRTMVVKGD-MHIGGVMLKLTESFGKEF 226
           IVG  ++    YV  LNEKR     G  + + G  +  T+SF +EF
Sbjct: 491 IVGGATYEEAAYVRSLNEKRMQGYGGPAVVLAGSSMLNTKSFLEEF 536


>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 609 SLDRSNGPCPATPPPPR 659
           S++  N P P  PPPPR
Sbjct: 148 SMESDNSPIPQAPPPPR 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,844,475
Number of Sequences: 27780
Number of extensions: 305711
Number of successful extensions: 1230
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)