Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021799
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.7  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 615 DRSNGPCPATPPPPRSLS 668
           D    P PA PPPP S S
Sbjct: 334 DSDTPPKPAPPPPPPSSS 351


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 346 MHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQLCKN 450
           +H      +  L F DC +   +  FSA+ ++ +N
Sbjct: 76  LHTATNYFVTSLAFADCLVGLVVMPFSAIYEVLEN 110


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 150 RFSFRSVT*IVRFHDPSPTISPSANIFTSSFN*TY*LQVSLPSAHC 13
           R+S R  + IV    PS + SPS ++ TS  +  +  + S  + HC
Sbjct: 23  RYSKRFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHC 68


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 258 PQRAWSDQSFLNSLPKL---SVSFSITPPMCMSPLTTIVRFSFRSVT*IVRFHDPSPTIS 88
           P ++WSD+S  N+L  L   ++S +        P +T+ + + R    +    + SPT  
Sbjct: 461 PTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTW 520

Query: 87  PSANI 73
             A++
Sbjct: 521 SPADL 525


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 146 KRTMVVKGDMHIGGVML 196
           K+  VV+GD+ +GG+M+
Sbjct: 108 KKEAVVEGDLVLGGLMM 124


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 670 AESDLGGGGVAGHGPFDLSKLFEEPLVAAMNVFVSGA 560
           A+ DL G     +   D+S  FE+PLV  +   +  A
Sbjct: 483 ADDDLFGPASPAYVHEDVSPTFEKPLVREIEKTIDDA 519


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -2

Query: 371 SWILSGLCMGVKCRAASA*T 312
           +W+L  +C+G+ C+  ++ T
Sbjct: 3   TWLLLVVCLGIACQGITSVT 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,883
Number of Sequences: 438
Number of extensions: 4046
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)