Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021799
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49730.2 68414.m05577 protein kinase family protein contains ...    33   0.17 
At1g49730.1 68414.m05575 protein kinase family protein contains ...    33   0.17 
At3g19120.1 68416.m02428 expressed protein                             29   2.8  
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    28   5.0  
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)...    28   5.0  
At1g16110.1 68414.m01931 wall-associated kinase, putative contai...    27   8.7  

>At1g49730.2 68414.m05577 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain; similar to AtPK2324
           (GI:1785621) [Arabidopsis thaliana]; similar to
           receptor-like protein kinase (GI:1644291) [Catharanthus
           roseus]; similar to somatic embryogenesis receptor-like
           kinase (GI:2224911) [Daucus carota]
          Length = 450

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 358 LRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNL 453
           L  QLP L   DC +DFS   F+ V  +C N+
Sbjct: 16  LATQLPSLMAADCPLDFSGSNFTLVATVCSNI 47


>At1g49730.1 68414.m05575 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain; similar to AtPK2324
           (GI:1785621) [Arabidopsis thaliana]; similar to
           receptor-like protein kinase (GI:1644291) [Catharanthus
           roseus]; similar to somatic embryogenesis receptor-like
           kinase (GI:2224911) [Daucus carota]
          Length = 663

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 358 LRIQLPDLRFIDCKIDFSIDTFSAVIQLCKNL 453
           L  QLP L   DC +DFS   F+ V  +C N+
Sbjct: 16  LATQLPSLMAADCPLDFSGSNFTLVATVCSNI 47


>At3g19120.1 68416.m02428 expressed protein
          Length = 446

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 576 TFIAATRGSSNSLDRSNGPCPATPPP 653
           +F+A  R S+ S   S  P P+ PPP
Sbjct: 61  SFLAVNRSSTESSSSSESPSPSPPPP 86


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +1

Query: 271 KWLSRPKHTLDQYGVHADAALHFTPMHKPLRIQLPDLRFIDCKIDFSIDTFSAVIQL 441
           K+L +P    +  GV    A+   P+H    +  P  RF+ C++   +  ++A + L
Sbjct: 145 KFLGQPDDIAELSGV---VAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVAL 198


>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
           Similar to Arabidopsis luminal binding protein
           (gb|D89342); contains Pfam domain PF00012: dnaK protein
          Length = 678

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +2

Query: 95  VGDGSWNLTIYVTDLNEKRTMVVKGDMHIGG------VMLKLTESFGKEFKKDWS-DHAL 253
           +G G+++++I   D      +   GD H+GG      VM    +   K++ KD S DH  
Sbjct: 245 LGGGTFDVSILTIDNGVFEVLSTSGDTHLGGEDFDHRVMDYFIKLVKKKYNKDISKDHKA 304

Query: 254 CGRL 265
            G+L
Sbjct: 305 LGKL 308


>At1g16110.1 68414.m01931 wall-associated kinase, putative contains
           similarity to wall-associated kinase 2 GI:4826399 from
           [Arabidopsis thaliana]
          Length = 642

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 609 SLDRSNGPCPATPPPPRSLSAT 674
           +L   NG   ATPPPP S S+T
Sbjct: 19  TLQLINGSSAATPPPPNSNSST 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,215
Number of Sequences: 28952
Number of extensions: 284446
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)