Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021798
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 6e-55
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 107 2e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 6e-24
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 99 7e-22
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 65 1e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 1e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.094
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.38
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.38
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.0
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 2.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 4.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.1
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 8.1
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (508), Expect = 6e-55
Identities = 106/153 (69%), Positives = 111/153 (72%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 433
+SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREK
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Query: 434 MTQIMFETFNTPAMYVAIQAVLSLYRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVW 613
MTQI+FETFN PA YVAIQAVLSLY P P
Sbjct: 119 MTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRL 178
Query: 614 T*PVRDLTDYLMKILTERGYSFTTTAEREIVRD 712
RDLTDYLMKIL ERGY+F+TTAEREIVRD
Sbjct: 179 DLAGRDLTDYLMKILMERGYTFSTTAEREIVRD 211
Score = 122 bits (293), Expect = 7e-29
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +3
Query: 84 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 263
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/38 (94%), Positives = 38/38 (100%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 624
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 182
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 107 bits (257), Expect = 2e-24
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = +2
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 442
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 443 IMFETFNTPAMYVAIQAVLSLYRPVVPP---VSCWTPATVSPTPCPSTRDTHSPTPSCVW 613
MFE + +YVAIQAVLSLY + V T S H V
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV- 180
Query: 614 T*PVRDLTDYLMKILTERGYSFTTTAEREIVRD 712
RD T YL+ +L +GY+F TA+ E VR+
Sbjct: 181 --AGRDATRYLISLLLRKGYAFNRTADFETVRE 211
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 90 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 260
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
Score = 52.0 bits (119), Expect = 8e-08
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1
Query: 514 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 624
G ++G+V+DSGDGV+H VP+YE L H + RLD+AG
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAG 182
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (252), Expect = 6e-24
Identities = 63/156 (40%), Positives = 91/156 (58%), Gaps = 6/156 (3%)
Frame = +2
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 439
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 440 QIMFETFNTPAMYVAIQAVLSLY---RPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCV 610
+ +ET N PA+ ++Q VL+LY R + C T S P D S PS +
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHS-VP---IYDGFS-IPSAI 180
Query: 611 WT*PV--RDLTDYLMKILTERGYSFTTTAEREIVRD 712
+ RD+TDYL L + G+ ++AE+EIVR+
Sbjct: 181 QQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVRE 216
Score = 67.7 bits (158), Expect = 2e-12
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 257
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
Score = 53.6 bits (123), Expect = 3e-08
Identities = 21/38 (55%), Positives = 32/38 (84%)
Frame = +1
Query: 511 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 624
S RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ G
Sbjct: 150 SARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGG 187
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 98.7 bits (235), Expect = 7e-22
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +2
Query: 275 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 454
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 455 TFNTPAMYVAIQAVLSL 505
+FN +Y+A+QAVL+L
Sbjct: 149 SFNCAGLYIAVQAVLAL 165
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +1
Query: 523 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 624
TG V+DSGDGV+H +P+ EGY + +I + LAG
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAG 213
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 251
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 466
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 467 PAMYVAIQAVLSLYRPVVPPVS 532
P++ I + S Y P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 102 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 197
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 520 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGAR 630
++GIVL+ G+ SH +P+ G + R+ G++
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = +2
Query: 254 KSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 433
KS G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K
Sbjct: 58 KSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVK 116
Query: 434 MTQIMFETFNTPAMYVAIQAVLSLY 508
+ MFE+ PA Y+A Q + +
Sbjct: 117 TLETMFESLRCPATYLAKQETCAAF 141
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 188
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +2
Query: 296 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 475
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 476 YVAIQAV 496
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +3
Query: 87 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 251
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 454
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 455 TFNTPAMYVAIQAVLSLY 508
P +A + ++ LY
Sbjct: 172 ECQVPGFTIAYEPLMGLY 189
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.094
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 347 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 490
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 319 IPVSDDSVFDGVFEGQDTSFALASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 140
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 139 PALHIP 122
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 244 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 83
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 529 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 624
+V+DSG +H +P+ + A+ R+D+ G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGG 190
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +2
Query: 425 REKMTQIMFETFNTPAMYVAIQAVLSLYRPVVPPVSCWTPATVSPTPCPSTRDTHSPTP 601
RE++ Q+ + P+ Y+ LS YR +P + P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPYR---------SPNSY-PSLLPSTHSPHSPAP 182
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 247 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 131
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 512 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 604
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 3.5
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -2
Query: 278 GSGYLFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 105
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 147 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 251
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 389 LLTEAPLNPKANREKMTQIMFETFN 463
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 129 TYRSHCLLPTRQLLRRTS*ISEI 61
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 521 PPVSCWTPATVSPTPCPSTRDTHSP 595
PPV+C TP P C + H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 237 KSPSVPYRPSRPDGGAFPRSRGTR 166
K+PS PY SRP A S TR
Sbjct: 312 KAPSYPYSSSRPSASASLASSPTR 335
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 453 KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 545
KH+ R SKP TVR+ H++ + R
Sbjct: 942 KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,003
Number of Sequences: 5004
Number of extensions: 70747
Number of successful extensions: 243
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -