Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1TR13 Cluster: SNF2-related protein; n=1; Acidovorax a...    35   1.7  
UniRef50_Q4WC54 Cluster: OPA3 domain protein; n=8; Eurotiomyceti...    34   2.3  
UniRef50_A6G5R3 Cluster: Putative atp /gtp binding protein; n=1;...    33   6.9  

>UniRef50_A1TR13 Cluster: SNF2-related protein; n=1; Acidovorax
           avenae subsp. citrulli AAC00-1|Rep: SNF2-related protein
           - Acidovorax avenae subsp. citrulli (strain AAC00-1)
          Length = 991

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 229 APAHSSSSTDETRLQLTSNMLVFEQRIRLRNIGRGVVLNARLVHG 363
           +PAHS+S+   T +   S+   F+ R+ LR +GRG  L     HG
Sbjct: 96  SPAHSASADGSTTVPPFSSASTFQPRLTLRTLGRGDGLLGMRAHG 140


>UniRef50_Q4WC54 Cluster: OPA3 domain protein; n=8;
           Eurotiomycetidae|Rep: OPA3 domain protein - Aspergillus
           fumigatus (Sartorya fumigata)
          Length = 293

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 27/128 (21%), Positives = 53/128 (41%)
 Frame = +1

Query: 193 LW*LSASGNTVWAPAHSSSSTDETRLQLTSNMLVFEQRIRLRNIGRGVVLNARLVHGVEA 372
           LW      N + A A          + +  ++   + R+RL N+        R     E 
Sbjct: 21  LWKTYTFKNQIKAQAREHERFRRVCVSIAQSLHRIDMRLRLGNLRDNAAAQKRAAAEAEV 80

Query: 373 RGWRMKFGLLKADIEIEADEETYRELARRLASANVHVRPARRSALGHLNLPRALSLPSRF 552
           R  +     +K + E +A+EE    +A+  A+A+   +PA    +  L+  +A+   + F
Sbjct: 81  RKHKPTVPTVKTEAETKAEEEA---IAKAKAAASEAAKPAPTPHIRPLSESKAIESGATF 137

Query: 553 LNQPSLVL 576
           +++  L L
Sbjct: 138 ISETFLFL 145


>UniRef50_A6G5R3 Cluster: Putative atp /gtp binding protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative atp /gtp
           binding protein - Plesiocystis pacifica SIR-1
          Length = 1111

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 24/74 (32%), Positives = 32/74 (43%)
 Frame = +1

Query: 301 QRIRLRNIGRGVVLNARLVHGVEARGWRMKFGLLKADIEIEADEETYRELARRLASANVH 480
           + +R   +  G     RL    E R WR      +AD E+         LA+ L+SA  H
Sbjct: 378 EALRYLQLDAGDGERLRLWALAEFRRWREAS---RADDELSPPTAMLSSLAQALSSAPPH 434

Query: 481 VRPARRSALGHLNL 522
            RPAR   L H+ L
Sbjct: 435 ARPARSQELAHVAL 448


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,625,231
Number of Sequences: 1657284
Number of extensions: 10397278
Number of successful extensions: 31353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31343
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)