Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   4.9  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 444  GIGASSRLRQRPR*A--GASQCAWTPKSA--SSPIATKPISQPA 563
            G+  +S+ +  PR A  G++  A  P+    + P ATKP+S PA
Sbjct: 961  GLPPTSKSKPFPRLATGGSTAAARGPRPVVQNKPAATKPVSMPA 1004


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 430 EETYRELARRLASANVHVRPARRSALGHLNLPRALSLPSRFLNQPSLVLPIK*SRCI 600
           E   + + R+  +A V   P ++S L +   PR     + FLN  S +L +   +C+
Sbjct: 60  ESLVKLMRRQYPAAIVPPIPGKQSLLSYAKHPRKAKSDAEFLNFRSRMLELFLRQCL 116


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 504 AWTPKSASSPIATKPISQPAIVGTTNQMK 590
           +W P +A++PIA   I   +  G TN  K
Sbjct: 39  SWDPYAANAPIALSEIPSSSKSGKTNGSK 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,750
Number of Sequences: 5004
Number of extensions: 41523
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)