Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004           32   0.40 
09_06_0104 - 20888338-20888830,20888988-20889250                       31   0.93 
03_05_0071 - 20491521-20492813                                         30   1.6  
05_04_0399 - 20955319-20955838,20955939-20956201                       29   2.1  
01_06_1518 + 37925609-37925871,37925954-37926554                       29   2.1  
04_03_0265 - 13638816-13641348,13641432-13641490                       29   3.7  
01_06_1484 + 37690368-37690565,37690682-37690798,37692541-37692669     29   3.7  
03_05_0366 - 23505755-23506441                                         27   8.7  

>12_01_0484 + 3840020-3840152,3840261-3840390,3840467-3841004
          Length = 266

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 26/69 (37%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+  IN  GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAHINQHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR I+ L+
Sbjct: 54  RLRWINYLR 62


>09_06_0104 - 20888338-20888830,20888988-20889250
          Length = 251

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 25/69 (36%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDDRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR I+ L+
Sbjct: 54  RLRWINYLR 62


>03_05_0071 - 20491521-20492813
          Length = 430

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 382 RMKFGLLKADIEIEADEETYRELARRLASANVHVRPARRSALGHL 516
           ++KFG  + D E+ A ++   ELA++     ++   ARRSAL  L
Sbjct: 255 KVKFGFEEED-EVSARDKEKEELAKKKGKDAINAAEARRSALDEL 298


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIRAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR ++ L+
Sbjct: 54  RLRWMNYLR 62


>01_06_1518 + 37925609-37925871,37925954-37926554
          Length = 287

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLIAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR ++ L+
Sbjct: 54  RLRWMNYLR 62


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 187 GQLW*LSASGNTVWAPAHSSSSTDETRLQLTSNMLVFEQR 306
           G L    A G+ VW+   SS S     +  T N+++F+QR
Sbjct: 161 GNLVLSDADGSLVWSSGSSSRSVAGMEITDTGNLVLFDQR 200


>01_06_1484 + 37690368-37690565,37690682-37690798,37692541-37692669
          Length = 147

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +2

Query: 380 GG*NSVS*RLTSR*KPTRKPTGNWRVVSPPPTSTLGRRVAVR 505
           G   +V+   TSR +P R PT   R+V   P+S+LGR V+V+
Sbjct: 9   GANGTVAAASTSRLQPVR-PTPFSRLVLSQPSSSLGRAVSVK 49


>03_05_0366 - 23505755-23506441
          Length = 228

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 431 RKPTGNWRVVSPPPTS 478
           R+PT  WRV SPPP S
Sbjct: 23  RQPTTWWRVDSPPPAS 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,540,202
Number of Sequences: 37544
Number of extensions: 300528
Number of successful extensions: 925
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)