Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54002| Best HMM Match : POP1 (HMM E-Value=0)                        29   2.2  
SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)           29   3.8  
SB_45917| Best HMM Match : DMAP1 (HMM E-Value=1.7)                     28   6.7  
SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)                  28   6.7  
SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)               27   8.8  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
          Length = 886

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +1

Query: 196 W*LSASGNTVW----APAHSSSSTDETRLQ-LTSNMLVFEQRIRLRNIGRGVVLNARLVH 360
           W   A+G+++W          S   E +L  + SN+LV   ++ L   G+  V+   LV 
Sbjct: 496 WPTGAAGSSIWHRDARQQCKESKISEQKLNAMRSNLLVPGSKLELE--GQQSVVPVLLVQ 553

Query: 361 GVEARGWRMKF 393
              ARGW M F
Sbjct: 554 QPGARGWAMAF 564


>SB_8054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 280 SSAVVLSRQLKKM-NAPEPTRYSRLHSITIAGRQPTSTTICSSFTEIIDKS 131
           +SAVV S     M NAP+ T   +L + T A   PT+TT  S+ T    K+
Sbjct: 207 TSAVVASSSAVIMTNAPKITTTEQLATTTAAETTPTTTTSASTTTATTTKA 257


>SB_43126| Best HMM Match : Myosin_head (HMM E-Value=4.1e-32)
          Length = 898

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 421 EADEETYRELARRLASANVHVRPARRSALGHLNLPRALSLPSRFL 555
           E ++ + + LA  +  + +HV P++  A+    +P  ++ P RFL
Sbjct: 111 EFNKRSIKFLAHIIDGSGIHVDPSKTDAITRYPVPTTVTEPQRFL 155


>SB_45917| Best HMM Match : DMAP1 (HMM E-Value=1.7)
          Length = 194

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 253 LKKMNAPEPTRYSRLHSITIAGRQPTSTTICSSFTEIIDK 134
           +K+MNA E  +Y R +   IA R  T+  +  SF ++  K
Sbjct: 70  VKRMNAEEVRKYERRYETAIASR--TTDALADSFLKLTTK 107


>SB_38235| Best HMM Match : Pox_A32 (HMM E-Value=0.32)
          Length = 651

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 316 AIEFSARKRAYYSSAVVLSRQLKKMNAPEPTRYSRLHSITIAGRQPTSTTICSSFTEIID 137
           AI  ++RK        +    +K+M+A E  +Y R +   IA R  T+  +  SF ++  
Sbjct: 417 AILVASRKSREMVGKALTHDDVKRMSAEEVRKYERRYETAIASR--TTDALADSFLKLTT 474

Query: 136 K 134
           K
Sbjct: 475 K 475


>SB_49930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 387 EIRSPEG*HRDRSRRGNLQGIGASSRLRQRPR*AGASQCAWTPKSASSPIATKP 548
           E R     H +RS + +L+     +RL++  +    S+      +A+SPIAT P
Sbjct: 56  ETRDVTNQHHERSNQSSLKQSNVLTRLKRTSQHLRDSRLNQRDATATSPIATPP 109


>SB_26437| Best HMM Match : Pkinase (HMM E-Value=3.6e-36)
          Length = 436

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 226 WAPAHSSSSTDETRLQLTSNMLVFEQRIRLRNIGR 330
           W  A+ SS  +ET LQL  + L  E+ + +R I R
Sbjct: 115 WRLANGSSLKEETELQLELDKLDRERSLHIREIKR 149


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 423  FYLDVSLQETEFHPPTARFHAVNEPSVEHNSAAYIA 316
            F  D+   E E+ PP A F +    SV   S  Y+A
Sbjct: 3166 FIEDLEQLEAEYKPPVAEFMSYVHTSVNEESQMYLA 3201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,541
Number of Sequences: 59808
Number of extensions: 330581
Number of successful extensions: 941
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)