Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     30   1.1  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     30   1.1  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    30   1.1  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 TLGSFTAWKRA-VGG*NSVS*RLTSR*KPTRKPTGNWRVVSPPPTST 481
           T  SF++W+R+   G  S S R TS+   +   T +  + +PPPT+T
Sbjct: 14  TTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 60


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 TLGSFTAWKRA-VGG*NSVS*RLTSR*KPTRKPTGNWRVVSPPPTST 481
           T  SF++W+R+   G  S S R TS+   +   T +  + +PPPT+T
Sbjct: 18  TTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 TLGSFTAWKRA-VGG*NSVS*RLTSR*KPTRKPTGNWRVVSPPPTST 481
           T  SF++W+R+   G  S S R TS+   +   T +  + +PPPT+T
Sbjct: 14  TTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 60


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 344 TLGSFTAWKRA-VGG*NSVS*RLTSR*KPTRKPTGNWRVVSPPPTST 481
           T  SF++W+R+   G  S S R TS+   +   T +  + +PPPT+T
Sbjct: 18  TTSSFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical
           protein ZK1058.1 protein.
          Length = 744

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +1

Query: 391 FGLLKADIEIEADEETYRELARRLASANVHVRPARRSALGHLNLPRALSLPSRFLNQPSL 570
           F  L  D+++    +T  E A++   A+VHV  A   A GHL L   L    + L +P +
Sbjct: 629 FADLGFDVDVGPLFQTPLEAAQQAVDADVHVIGASSLAAGHLTLIPQLIGELKKLGRPDI 688

Query: 571 VL 576
           ++
Sbjct: 689 LV 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,737
Number of Sequences: 27780
Number of extensions: 244025
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)