Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        25   0.76 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -2

Query: 316 AIEFSARKRAYYSSAVVLSRQLKKMNAPEPTRYSRLHSITIAGRQPTSTTICSSF 152
           ++E S    A  ++AV  ++Q    N+P PT  S  HS + A   P + T  S +
Sbjct: 38  SLESSLSAAAVAAAAVNYAQQ---HNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +2

Query: 29  SRAKFHSPCCTNAHSYCEK*CWTSK 103
           S   F+ PC      YC   C+  K
Sbjct: 197 SSISFYVPCIVMLGIYCRLYCYAQK 221


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 253  TDETRLQLTSNMLVFEQRIRLRNIGRGVVLNARLV 357
            TDETR  L      FEQR  +   G+G +L   LV
Sbjct: 940  TDETRKILEPFGFGFEQRGLVFVKGKGQLLTHYLV 974


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,870
Number of Sequences: 438
Number of extensions: 2852
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)