Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021797
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30230.1 68417.m04299 hypothetical protein                          31   0.44 
At4g09460.1 68417.m01557 myb family transcription factor               31   0.44 
At4g38620.1 68417.m05465 myb family transcription factor (MYB4) ...    30   1.0  
At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At5g63480.1 68418.m07969 expressed protein                             27   9.6  
At4g09290.1 68417.m01537 hypothetical protein                          27   9.6  
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P...    27   9.6  

>At4g30230.1 68417.m04299 hypothetical protein 
          Length = 260

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
 Frame = +1

Query: 232 PAHSSSSTDETRLQ--LTSNMLVFEQRIRLRNIGRGVVLNARLVHGVEARGWRMKFGLLK 405
           P  +S S D  +L   LT+     E     +N G+    ++  V  V  R + + FG++K
Sbjct: 132 PMRASRSLDYRKLSRGLTTVHSPPENSSSTKNTGKPETTSSGSVKSVRPRWYVIMFGMVK 191

Query: 406 ADIEIEADEETYRELARRLASANVHVRPARRSALGHLNLPRALSLPSRFLNQPSLVLP 579
              EIE  +   R++ R +    +   PA R A G  +   + S   RFLN  S   P
Sbjct: 192 FPPEIELKDIKSRQIRRNIPPV-MFPSPANRRARGSRSPSPSPSW--RFLNALSCKKP 246


>At4g09460.1 68417.m01557 myb family transcription factor
          Length = 236

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 26/69 (37%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP S G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDQRLVDYIRNHGE----GCWRSLPKSAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR I+ L+
Sbjct: 54  RLRWINYLR 62


>At4g38620.1 68417.m05465 myb family transcription factor (MYB4)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 282

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 25/69 (36%), Positives = 33/69 (47%)
 Frame = +2

Query: 47  SPCCTNAHSYCEK*CWTSKGLEVSXLLL*FINYFGETRTNGCRSRLPASYGD*VQAGIPC 226
           SPCC  AH+   K  WT    E    L+ +I   GE    GC   LP + G  ++ G  C
Sbjct: 4   SPCCEKAHT--NKGAWTK---EEDERLVAYIKAHGE----GCWRSLPKAAG-LLRCGKSC 53

Query: 227 GLRRIHLLQ 253
            LR I+ L+
Sbjct: 54  RLRWINYLR 62


>At2g37150.2 68415.m04558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 463 ASANVHVRPARRS--ALGHLNLPRALSLPSRFLNQPSL 570
           +S NV  RP   S  +LG  NLPR+LSL S   +  S+
Sbjct: 211 SSRNVRSRPTLDSETSLGRNNLPRSLSLDSHSTHHHSV 248


>At2g37150.1 68415.m04557 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 546

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 463 ASANVHVRPARRS--ALGHLNLPRALSLPSRFLNQPSL 570
           +S NV  RP   S  +LG  NLPR+LSL S   +  S+
Sbjct: 211 SSRNVRSRPTLDSETSLGRNNLPRSLSLDSHSTHHHSV 248


>At5g63480.1 68418.m07969 expressed protein
          Length = 189

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +1

Query: 202 LSASGNTVWAPAHSSSSTDETRLQLTSNMLVFEQRIRLRNIGRGV-VLNARLVHGVEARG 378
           +SA    +   +H S S        + N ++ E  +R +N    +  + A + +  +A+ 
Sbjct: 70  VSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPNSQKAKA 129

Query: 379 WRMKFGL--LKADIEIEADEETYRELARRLASANVHVR 486
             M+ GL   +++ EIE  EE    L   +A  NVHV+
Sbjct: 130 SEMQNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVK 167


>At4g09290.1 68417.m01537 hypothetical protein
          Length = 376

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 422 KPTRKPTGNWRVVSPPPT 475
           K  RKPT N  V SPPP+
Sbjct: 185 KGPRKPTNNQSVTSPPPS 202


>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 661

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 422 KPTRKPTGNWRVVSPPPTSTL 484
           K  RKPT N  V SPPP + +
Sbjct: 219 KGKRKPTNNQSVTSPPPDADI 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,937
Number of Sequences: 28952
Number of extensions: 223409
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)