Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021796
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    47   3e-06
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      31   0.22 
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   2.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   3.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.8  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    26   6.3  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +2

Query: 497 RQPNLCKRDYLRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRFCVGDR 676
           +Q  LC+ DY R       CA+C   +  + +   A +  +H+E F C  CY  F   D 
Sbjct: 163 KQVPLCETDYFRRLDLL--CASCGMALRGYYIT--ALNKKFHIEHFTCSLCYTVFGPNDS 218

Query: 677 FYLCENKILCEYDY 718
           +Y  E K+ C Y Y
Sbjct: 219 YYEYEGKVYCHYHY 232



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +2

Query: 527 LRLFGNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC----YHRFCVGDRFYLCEN 694
           +R   ++  CA+C +VI      +RA  N+YHLECF C  C      +F   D   L + 
Sbjct: 107 VRKVSSSKICASCGQVISG--QYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQ 164

Query: 695 KILCEYDY 718
             LCE DY
Sbjct: 165 VPLCETDY 172



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 458
           +ICA C +VI+ +Y ++AL  ++H +C +C  C+
Sbjct: 114 KICASCGQVISGQY-VRALGNIYHLECFRCHDCN 146


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 363 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGH 482
           C  C K I     +K  D  +H  C  CG C+  LG+ G+
Sbjct: 378 CKKCRKPILG-ISVKGSDGEYHSQCWTCGACNALLGDEGY 416



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 554 CAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRF-CVGDRFYLCENKILCEYDYEE 724
           C +C   + A  ++  A     H +CF C  C      VG  FY  E K  C  DY E
Sbjct: 258 CHSCGGSLRAGRIIS-ASGKKLHPQCFKCDTCSQNLEHVG--FYYREGKFYCHLDYHE 312



 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 554 CAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRFCVGDR-FYLCENKILC 706
           C  C K  P   + ++     YH +C+ C  C     +GD  +++ EN  +C
Sbjct: 378 CKKCRK--PILGISVKGSDGEYHSQCWTCGAC--NALLGDEGYFMIENTPIC 425


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 260 AGHGCYEGSTFV-SPASYIAGNDCNICTESSSTTDMRWVQQSDHRAVSLEGFGS 418
           A      G TF  S  S    ND N  T SS+ + +  ++Q   + ++L+GF S
Sbjct: 99  ASSSAQTGDTFSGSSQSNFNTNDLNQMTSSSNLSTVTPIKQDHQKPMNLQGFPS 152


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = +3

Query: 360 ICAGCSKVITERYL-LKALDQLWHEDCLKCGCCD 458
           +C  C +    R   +     +WH+DC  C  CD
Sbjct: 18  VCFRCGQAFQRRETPISFGGHMWHKDCFCCTKCD 51



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 554 CAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
           C AC   I  + ++    S  YH ECF C  C
Sbjct: 78  CTACRMRIKDYALMSGYDS--YHRECFRCHDC 107


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 423 WHEDCLKCGCCDCRL 467
           WH DC KC  C+ +L
Sbjct: 44  WHSDCFKCVNCNKKL 58


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 471 PRVGSRSSRT-SNSPRATVDPKPSRDTAR*SLCCTQRISVVEEDSVQMLQSLP 316
           P+ G R  R  SN P+ T + KP+ +TA      +   SV+ E+S  ++ +LP
Sbjct: 17  PKGGIRKRRARSNKPKPTKNAKPAVNTA------SALKSVISEESKIIVSNLP 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,961
Number of Sequences: 5004
Number of extensions: 54610
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)