Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021796
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 42 5e-04
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 38 0.008
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 36 0.043
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 35 0.076
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 32 0.40
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833... 29 2.8
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 2.8
05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878 29 5.0
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 28 6.6
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 41.9 bits (94), Expect = 5e-04
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 473
++CAGC I + L +D +WH C +C CD + E
Sbjct: 176 RVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 363 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 473
CAGC I L +D +WH C +C C+ + E
Sbjct: 257 CAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISE 293
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 35.5 bits (78), Expect = 0.043
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCC 455
++C GC I + L L WH C +C C
Sbjct: 112 RVCGGCKHEIGHGHYLSCLGMYWHPQCFRCSSC 144
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 34.7 bits (76), Expect = 0.076
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 363 CAGCSKVITERYLLKALDQLWHEDCLKCGCCD 458
CAGC I L + +WH +C +C C+
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACN 589
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
G T C AC+K + + + A + VYH CF C C
Sbjct: 7 GTTTKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 42
>10_08_0547 -
18682357-18682683,18682971-18683060,18683279-18683301,
18683397-18683496,18683615-18683749
Length = 224
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
G C AC+K + ++ + A S YH CF C C
Sbjct: 5 GTQDKCNACDKTVHFIDL-LTADSIPYHKSCFRCSHC 40
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
G T C +C + + E + A VYH CF C C
Sbjct: 8 GTTQKCDSCGRTVYPVEE-LAADGRVYHRPCFRCTHC 43
>05_01_0423 + 3322335-3322385,3322618-3323532,3323636-3323878
Length = 402
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 138 AGSVLTHTSKDHGTKNIVHFLVNIFFNTRHK 46
A +LTH +K H +H + NI N RH+
Sbjct: 29 APHLLTHPAKHHLVSKTIHSVFNIEVNVRHQ 59
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 549 PVLPNNLK*SL-LQRL-GWRACIECGQPPRVGSRSSRTSNSP 430
PVL N+L+ +Q GW +EC P VG SS S P
Sbjct: 238 PVLVNHLQHGFHVQHFNGWMNQVECQSAPHVGPASSAASLDP 279
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,073,055
Number of Sequences: 37544
Number of extensions: 387746
Number of successful extensions: 1087
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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