Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021796
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 39 0.003
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 36 0.021
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 36 0.027
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 33 0.25
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 33 0.25
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 32 0.34
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 32 0.45
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 31 0.59
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 31 0.78
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 31 0.78
At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containi... 30 1.4
At2g39830.1 68415.m04892 LIM domain-containing protein contains ... 30 1.4
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGE 473
+ICAGC+ I L L+ LWH +C +C C + E
Sbjct: 170 RICAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISE 208
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 342 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 458
NPP +C GC+ + + L LWH C C CD
Sbjct: 341 NPPL-SMCGGCNSAVKHEESVNILGVLWHPGCFCCRSCD 378
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 35.9 bits (79), Expect = 0.027
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 342 NPPQPQICAGCSKVITERYLLKALDQLWHEDCLKCGCC 455
NPP P +C GC+ + + L LWH C C C
Sbjct: 280 NPP-PSLCGGCNFAVEHGGSVNILGVLWHPGCFCCRAC 316
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRFCVGDRFYLCENKILCEYDY 718
G C AC K + A E+ + A YH CF C C R + + E + C+ +
Sbjct: 5 GTQQKCKACEKTVYAVEL-LSADGVGYHKSCFKCTHCKSRLQLSS-YSSMEGVLYCKPHF 62
Query: 719 EE 724
E+
Sbjct: 63 EQ 64
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRL 467
Q C C K + LL A +H+ C KC C RL
Sbjct: 8 QKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRL 44
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 363 CAGCSKVITERYLLKALDQLWHEDCLKCGCCDC 461
CA CSK + + Q +H+ C KC C
Sbjct: 108 CATCSKTVYPIEKVTVESQTYHKSCFKCSHGGC 140
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRFCVGDRFYLCENKILCEYDY 718
G C AC+K + ++ + N YH CF C C + + + + + C+ +
Sbjct: 5 GTLDKCKACDKTVYVMDL-LTLEGNTYHKSCFRCTHCKGTLVISN-YSSMDGVLYCKPHF 62
Query: 719 EE 724
E+
Sbjct: 63 EQ 64
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
G T C AC+K + + + A + VYH CF C C
Sbjct: 5 GTTQKCMACDKTVYLVDK-LTADNRVYHKACFRCHHC 40
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 31.9 bits (69), Expect = 0.45
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 360 ICAGCSKVITERYLLKALDQLWHEDCLKCGCCD 458
IC GC I + AL WH +C C CD
Sbjct: 200 ICDGCKSAIEYGRSVHALGVNWHPECFCCRYCD 232
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QC 649
G T C AC+K + ++ M YH CF C C
Sbjct: 6 GTTDKCKACDKTVYVMDL-MTLEGMPYHKSCFRCSHC 41
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 539 GNTGYCAACNKVIPAFEMVMRARSNVYHLECFAC*QCYHRFCVGDRFYLCENKILCEYDY 718
G C AC K + E+ + A YH CF C C R + + + E + C +
Sbjct: 5 GTQQKCRACEKTVYPVEL-LSADGISYHKACFKCSHCKSRLQLSN-YSSMEGVVYCRPHF 62
Query: 719 EE 724
E+
Sbjct: 63 EQ 64
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRL 467
Q C C K + LL A +H+ C KC C RL
Sbjct: 8 QKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRL 44
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 581 AFEMVMRARSNVYHLECFAC*QCYHRFCVGDRFYL 685
A + +AR V H++C C +R+C+G R +L
Sbjct: 444 ASKFCFQARKIVKHIDCCKVPNCKYRYCLGTRMWL 478
>At3g18840.1 68416.m02392 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 698
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 444 CGCCDCRLGEVGHTLYTRANLISAREII*GYSA 542
C C + + E H LY NL SA +I GYS+
Sbjct: 306 CKCGNMKYAESAHLLYGFGNLYSASSMIVGYSS 338
>At2g39830.1 68415.m04892 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 503
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 357 QICAGCSKVITERYLLKALDQLWHEDCLKCGCCDCRLGEVGHTLYTR-ANLISAR 518
+IC GC+ I L + +H +C +C C + E H + T A LI R
Sbjct: 160 RICGGCNSDIGSGNYLGCMGTFFHPECFRCHSCGYAITE--HEIPTNDAGLIEYR 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,159
Number of Sequences: 28952
Number of extensions: 298683
Number of successful extensions: 861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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