Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021794X
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    36   0.004
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    27   1.7  
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    27   2.2  
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    25   6.8  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    25   9.0  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 20/82 (24%), Positives = 36/82 (43%)
 Frame = +3

Query: 201 STSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAW 380
           S  + + C+ + +     S C  +TDSSL  + +  ++L  L LG C  ITD G+  +  
Sbjct: 267 SDIELITCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCLLK 326

Query: 381 GXXXXXXXXXXSCWHVNDAGIA 446
                       C  ++D  ++
Sbjct: 327 SCKNITYIDFGGCLRLSDIAVS 348



 Score = 32.3 bits (70), Expect = 0.045
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
           C ++TD  +  + +S KN+  ++ GGC  ++D  +  IA
Sbjct: 313 CYEITDIGVQCLLKSCKNITYIDFGGCLRLSDIAVSAIA 351



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 IAQSLKNLEELELGGCCNITDTGLLLI 374
           I+ +  NL+ L +G C  + DTG++ I
Sbjct: 141 ISDNCPNLKALNIGNCGLVEDTGMVQI 167


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITD 356
           C ++T  SL +IAQ   NL+ L L  C  + D
Sbjct: 251 CSKITADSLFQIAQYCPNLQTLHLTYCGQMQD 282


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 225 RAAGIEKT*FSLCKQVTDSSLGRI-AQSLKNLEELELG--GCCNITDTGLLL 371
           RAAGI++T  SL    TD ++  I   S   + + E+G   CC++ D  L +
Sbjct: 23  RAAGIDRTKVSLLNSFTDITIRYIRLLSETAMAKAEVGRRSCCDLGDLRLAM 74


>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 499 PKCSSSGVPLASPPQHRWAIPASLTCQHDRRFNRRRF---LSPHAINSRPVSVML 344
           P+C  +GVPL   P  R    A L+  H+++  +R +   LS +A+  R V   L
Sbjct: 42  PRCGDTGVPLQGIPALRPREFARLS--HNKKTVQRAYGGCLSANAVKDRIVRAFL 94


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 345 CSNRLALVLPSSLTIERFFRVKSPLP 268
           C NR  L++PSS T      +++ LP
Sbjct: 64  CGNRKGLLVPSSTTDNELQHLRNSLP 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,694
Number of Sequences: 5004
Number of extensions: 35242
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)