Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021794X
(523 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 85 4e-17
SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10) 38 0.004
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 38 0.007
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 38 0.007
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4) 37 0.012
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 35 0.035
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07) 35 0.047
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 35 0.047
SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075) 34 0.062
SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05) 34 0.082
SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12) 32 0.25
SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082) 32 0.33
SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056) 32 0.33
SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024) 32 0.33
SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34) 31 0.44
SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5) 30 1.0
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 29 3.1
SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 27 7.1
SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021) 27 9.4
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 27 9.4
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 84.6 bits (200), Expect = 4e-17
Identities = 38/61 (62%), Positives = 45/61 (73%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
SLCKQ+TDSSLG+IA LKNLE L+L GCCNIT+TGLLL +WG SC H++D
Sbjct: 129 SLCKQITDSSLGKIADFLKNLEFLDLAGCCNITNTGLLLCSWGLVKLKHLNLRSCRHISD 188
Query: 435 A 437
A
Sbjct: 189 A 189
Score = 68.1 bits (159), Expect = 4e-12
Identities = 32/64 (50%), Positives = 41/64 (64%)
Frame = +1
Query: 7 RSVWRGVEAALHLRRPAPVLFASLARRGVRKLQVLSLRRGLRDAVAXXXXXXXXXXXXCY 186
R VWRGV+A LHLRR P LF SLA+RG+RK+++LSL++ L V CY
Sbjct: 46 RIVWRGVQARLHLRRSNPFLFPSLAKRGIRKIRILSLKKSLSFVVQSLSCIESLNLKGCY 105
Query: 187 SVTD 198
+VTD
Sbjct: 106 NVTD 109
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 282 SLGRIAQSLKNLEELELGGCCNITDTGL 365
SL + QSL +E L L GC N+TDT +
Sbjct: 85 SLSFVVQSLSCIESLNLKGCYNVTDTSI 112
>SB_34144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 41.1 bits (92), Expect = 5e-04
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXS 416
+EK S C ++TD SL I++ +L+ L+L GC ITD G+ ++
Sbjct: 174 LEKLSLSNCLRLTDKSLSAISRKCSSLKTLDLSGCVKITDRGIKALSRYSEHLTDINLKD 233
Query: 417 CWHVNDAGIAHLCCGGEARGTPELEHLGL 503
++ GI L ARG P+L + L
Sbjct: 234 TTGISIEGIELL-----ARGAPQLTRIQL 257
>SB_13832| Best HMM Match : LRR_1 (HMM E-Value=5.4e-10)
Length = 637
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
++T+ + I +LK+L L+L CC +T++G+ LIA C+ V++ GI
Sbjct: 423 ELTNVGIKHITNNLKSLTSLDLMDCCRVTNSGVALIAKEMPQLVQLNLSYCYKVSNQGI 481
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +3
Query: 264 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
+Q+TD + LK L L+L C NIT+ G+L I G S + + GI
Sbjct: 371 RQLTDRGTTTLCCKLKKLTTLDLRSC-NITNNGMLGIVQGLCHLKSLILSSHPELTNVGI 429
Query: 444 AHL 452
H+
Sbjct: 430 KHI 432
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
S C V DS + I + L NL+ L++ C NITD GLL
Sbjct: 382 SSCLHVGDSGMHVITELLTNLKMLKISWCANITDVGLL 419
Score = 34.7 bits (76), Expect = 0.047
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C TD+ L R ++ NL++L++ C ++ D+G+ +I C ++ D G
Sbjct: 358 CTMATDNFLKRCLPAMVNLQQLDISSCLHVGDSGMHVITELLTNLKMLKISWCANITDVG 417
Query: 441 I 443
+
Sbjct: 418 L 418
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
S CKQ+TD+ + + ++ +E L+L C +IT+T ++
Sbjct: 248 SACKQLTDNGVVSLVKNQSKIETLKL-CCLDITNTSVI 284
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGC 341
+ K S CK + DS++ +A +L ++ L L GC
Sbjct: 164 LSKLDISWCKGLGDSAVKTVATALPSISHLSLAGC 198
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C+++TD+ + + S+ L+ L L C +T TG++ IA C VN G
Sbjct: 260 CRRITDTGVEALVHSMAELQGLSLAKCRELTSTGIVTIAENCKQLKHLDITDCTLVNTQG 319
Query: 441 I 443
+
Sbjct: 320 L 320
Score = 35.1 bits (77), Expect = 0.035
Identities = 24/85 (28%), Positives = 34/85 (40%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
S C +TD L I + L L+ L L C ITDTG+ + C +
Sbjct: 232 SNCTDITDLGLHHIGRHLVRLKYLYLTCCRRITDTGVEALVHSMAELQGLSLAKCRELTS 291
Query: 435 AGIAHLCCGGEARGTPELEHLGLQD 509
GI + A +L+HL + D
Sbjct: 292 TGIVTI-----AENCKQLKHLDITD 311
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 210 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
+ +C + + F C ++TD+++ IA K + L+LG C IT+T L +A
Sbjct: 218 EELCLKCNLLNHIDFCGCNELTDNAVKSIATHCKKITNLKLGWCLKITETSLEALA 273
>SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4)
Length = 400
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIA 446
Q+TDS+LG + L LE L+L GC I D+ + I +C + D +A
Sbjct: 234 QMTDSALGSLVSHLPELENLDLRGCKQIRDSAVKKIVRHCPLLKCLALANCPRITDVTLA 293
Query: 447 HL 452
+
Sbjct: 294 EI 295
Score = 31.1 bits (67), Expect = 0.58
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
CKQ+ DS++ +I + L+ L L C ITD L IA
Sbjct: 258 CKQIRDSAVKKIVRHCPLLKCLALANCPRITDVTLAEIA 296
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
C+ VTD +G IA + +L L + GC I+D +L++A
Sbjct: 343 CQGVTDIGIGTIASNCPSLAHLNVCGCLAISDLSMLVVA 381
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
S C ++ D + I LE + L GC +TD GL IA
Sbjct: 445 SYCTKINDDCVKHIVTECTQLEFISLAGCHRVTDLGLKYIA 485
Score = 31.9 bits (69), Expect = 0.33
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGC------CNITDTGLLLIAWGXXXXXXXXXXSCW 422
C+ +TD ++ +IAQ+ + L L + GC NITD + +A C
Sbjct: 285 CQCITDIAIEKIAQNCRGLRYLCVAGCELPRPTGNITDVAIQKVAAYCLKLSHLDVKWCQ 344
Query: 423 HVNDAGIAHLCCGGEARGTPELEHLGL 503
V D GI G A P L HL +
Sbjct: 345 GVTDIGI-----GTIASNCPSLAHLNV 366
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
S C V D+ + +++ NLE L + C ITD + IA
Sbjct: 257 SFCAGVNDAGIATVSEFCPNLEHLNVRSCQCITDIAIEKIA 297
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 219 CCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 356
CC +E + C ++T SSL RIAQ+ L+ +++ C + D
Sbjct: 383 CC--TDLECLEIAECLRITHSSLNRIAQNCVKLKYIDMQVCSYLQD 426
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG--I 443
+TD ++ ++A L L++ C +TD G+ IA C ++D +
Sbjct: 320 ITDVAIQKVAAYCLKLSHLDVKWCQGVTDIGIGTIASNCPSLAHLNVCGCLAISDLSMLV 379
Query: 444 AHLCC 458
CC
Sbjct: 380 VATCC 384
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 312 NLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPELE 491
++ L L C ++T++ L + C VNDAGIA + + P LE
Sbjct: 224 SITSLSLKSCNDLTNSTLNAFTYNCNALKELDVSFCAGVNDAGIATV-----SEFCPNLE 278
Query: 492 HLGLQDAK 515
HL ++ +
Sbjct: 279 HLNVRSCQ 286
>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
Length = 483
Score = 34.7 bits (76), Expect = 0.047
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
C + D L +A S +NL+ L+L C +ITD GL I
Sbjct: 370 CLALDDDGLEAVADSCRNLKTLDLSWCWDITDKGLQYI 407
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLL 371
S C +VTD++L + + +EEL++G C +T G++L
Sbjct: 176 SNCSRVTDTALEVVIKHCVEIEELDIGKCSAVTGAGVML 214
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
CK +T+ +L + Q+ L L + C +TDT L ++ C V AG
Sbjct: 152 CKNITNFTLFYVGQNCLRLRTLNISNCSRVTDTALEVVIKHCVEIEELDIGKCSAVTGAG 211
Query: 441 I 443
+
Sbjct: 212 V 212
>SB_5366| Best HMM Match : LRR_1 (HMM E-Value=0.00075)
Length = 310
Score = 34.3 bits (75), Expect = 0.062
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
+TD L +I++ L+ L L +G C ITD + IA C V G+
Sbjct: 234 ITDEGLCKISRHLRELRVLNIGQCTQITDQSIASIASNLICITNIDLYGCTKVTKCGLEK 293
Query: 450 L 452
L
Sbjct: 294 L 294
Score = 34.3 bits (75), Expect = 0.062
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
C Q+TD S+ IA +L + ++L GC +T GL
Sbjct: 257 CTQITDQSIASIASNLICITNIDLYGCTKVTKCGL 291
>SB_7626| Best HMM Match : LRR_1 (HMM E-Value=1.5e-05)
Length = 260
Score = 33.9 bits (74), Expect = 0.082
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQS--LKNLEELELGGCCNITDTGL 365
C Q+TD+ L +A + L LE L+L GC N+T GL
Sbjct: 176 CYQLTDAGLRSLASNGGLPTLEFLDLSGCLNVTAQGL 212
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA--WGXXXXXXXXXXSCWHVND 434
C +V + +L Q + L L L GC +TD GL +A G C +V
Sbjct: 154 CSKVDEQNL----QGKRTLRYLSLSGCYQLTDAGLRSLASNGGLPTLEFLDLSGCLNVTA 209
Query: 435 AGIAHL 452
G+ L
Sbjct: 210 QGLCDL 215
>SB_25803| Best HMM Match : PLDc (HMM E-Value=3.9e-12)
Length = 854
Score = 32.3 bits (70), Expect = 0.25
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
C + D ++ +A++ L L LGGC ITD L +A
Sbjct: 739 CTSIGDEAVIALAENCPQLMHLNLGGCLQITDRSLKALA 777
>SB_40049| Best HMM Match : LRR_1 (HMM E-Value=0.082)
Length = 380
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITD 356
C TD + + K+LE L+L GC NITD
Sbjct: 227 CPGFTDEGVKCTLRFFKDLEHLDLSGCLNITD 258
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 231 AGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
A +E C ++TD L + +NL+ + + C ++TD G L
Sbjct: 108 ASMESLNLRQCARITDVGLKYVGMRCQNLKIINISECFSLTDAGFL 153
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 312 NLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHL 452
++E L L C ITD GL + C+ + DAG L
Sbjct: 109 SMESLNLRQCARITDVGLKYVGMRCQNLKIINISECFSLTDAGFLEL 155
>SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)
Length = 298
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 201 STSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQS---LKNLEELELGGCCNITDTGL 365
ST + +G++K S C+ +TD + ++ S ++LE LEL C ITD L
Sbjct: 177 STLNHLSLWCSGLQKLSLSHCELITDDGIHQLGASPCATEHLEFLELDNCPLITDNAL 234
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
+LC+ +TDS+L ++ L++L L C ITD G+
Sbjct: 170 ALCR-ITDSTLNHLSLWCSGLQKLSLSHCELITDDGI 205
>SB_21101| Best HMM Match : F-box (HMM E-Value=0.0024)
Length = 287
Score = 31.9 bits (69), Expect = 0.33
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
S C+ V+ + +++ K+LE ++L GC ITD + +A C+ ++D
Sbjct: 151 SECRWVSPDGIIQVSLCCKDLEIVDLTGCWEITDHSVCSLASFCNKLKVILLNGCYSISD 210
Query: 435 ---AGIAHLC--------CGGEARGTPELEHLG 500
I LC CG P + H+G
Sbjct: 211 DSVRAIGRLCPSLTDLGLCGCWRVSNPAISHIG 243
>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 31.9 bits (69), Expect = 0.33
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +3
Query: 210 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
+ + C + SLC VTD S G I Q L L L C I+D GL+
Sbjct: 346 KEIVCGCPNLVILNLSLCFNVTDKSAGHIVQHCTKLSSLYLVH-CRISDEGLV 397
>SB_11751| Best HMM Match : Peptidase_C23 (HMM E-Value=0.34)
Length = 723
Score = 31.5 bits (68), Expect = 0.44
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +3
Query: 225 RAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXX 404
RAA I + CK + + ++A S NLE L L G + D + ++A
Sbjct: 551 RAAEIRVMIANGCKAFSIDVIRKLAMSCPNLETLLLAGLKEMDDEMVSIVARQCPKLQAI 610
Query: 405 XXXSCWHVNDAGIAHL 452
C V DAG++ L
Sbjct: 611 NLKGCELVTDAGVSEL 626
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 210 QRVCCRAAG-IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNIT 353
+ VC A G + + S C +TD L I + +E L L C +T
Sbjct: 490 EEVCSTAGGTLVELDLSACSAITDDGLSAIPRHCYVIESLILSFCSKVT 538
>SB_40752| Best HMM Match : Ribosomal_L15e (HMM E-Value=2.5)
Length = 374
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +3
Query: 21 WRRSRSASTETCSCTVCILS 80
WR+ R+A++ET C VC+L+
Sbjct: 211 WRKKRAANSETKECDVCLLT 230
>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLL 371
C+ VTD L I +L+ L L C NITD +
Sbjct: 151 CEMVTDDVLQIIMMCCPSLQHLNLSSCKNITDNAFAI 187
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGC 341
S C+ VTD + R+A S NL L L C
Sbjct: 1093 SWCEDVTDVGISRVATSCVNLRTLSLRQC 1121
>SB_11436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.9 bits (64), Expect = 1.3
Identities = 22/85 (25%), Positives = 32/85 (37%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C +TD SL IA K L+ + C +TD GL I + V+D
Sbjct: 254 CFFITDESLKSIANQCKCLKTFRIRECQQVTDQGLKEILLSCSMLRTLEIERLYQVSDLT 313
Query: 441 IAHLCCGGEARGTPELEHLGLQDAK 515
+ A P L+ L + D +
Sbjct: 314 NQSM---NRAENLPNLQSLKITDTR 335
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
V D + IAQ+ NL+ L+L C +TD L +A
Sbjct: 122 VDDRMVVLIAQNCPNLKRLDLKACFKVTDASLKEVA 157
>SB_5455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 258 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
L ++ D SL +A + +NL ++ L GC I GL
Sbjct: 324 LFTKIDDDSLACLANNCRNLVDINLAGCERIFSDGL 359
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 511 ASCKPKCSSSGVPLASPPQHRWAIPASLTCQHDRRFNRRRFLSPHAI---NSRPVS 353
++C CS S V A PQ +WA ++++ DRR SP + N+R VS
Sbjct: 125 SACAVSCSPSAVSTA--PQEQWASVSTVSGDEDRRQPVAEMSSPGVLKTANNRGVS 178
>SB_16860| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 691
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 276 DSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
D+ L I N++ L+L C NITD G+ I
Sbjct: 137 DNLLQVIGDHCHNIQVLKLANCLNITDNGIRAI 169
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 464 PSAAQVGDSGIVNVPTRPQI*STEIP 387
P+A G+ G V VPT+P I +T P
Sbjct: 967 PTATSGGEGGNVTVPTKPSINTTMTP 992
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 417 CWHVNDAGIAHLCCGGEARGTP 482
C+HVNDAG+ C G G+P
Sbjct: 237 CYHVNDAGV---ICSGPQTGSP 255
>SB_46856| Best HMM Match : LRR_1 (HMM E-Value=0.00021)
Length = 923
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
++TD+S+ +A+S LE + + C +TD L +A
Sbjct: 259 RITDASVKVLAKSCSQLEHVYMVDCPRLTDLSLKALA 295
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGC 341
C +TD L ++ QS LE + L GC
Sbjct: 180 CDTITDEVLAKVGQSCPLLESVCLNGC 206
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,470
Number of Sequences: 59808
Number of extensions: 289869
Number of successful extensions: 819
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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