Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021794X
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical pr...    44   5e-05
L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical pr...    44   5e-05
AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    33   0.12 
Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>L14745-2|AAA27922.2|  461|Caenorhabditis elegans Hypothetical
           protein C02F5.7a protein.
          Length = 461

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 30/100 (30%), Positives = 41/100 (41%)
 Frame = +3

Query: 204 TSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
           T Q +   A  +E    S C Q++D SL  + Q   NL+ LEL GC  + D G + +A G
Sbjct: 270 TVQNIANGATALEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARG 329

Query: 384 XXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPELEHLGL 503
                      C  ++D  I  L     A     L H  L
Sbjct: 330 CRQLERLDMEDCSLISDHTINSLANNCTALRELSLSHCEL 369



 Score = 34.3 bits (75), Expect = 0.054
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +3

Query: 225 RAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXX 404
           R   +E      CK+VTD+S   + +    L  L L  C +ITD  +  I  G       
Sbjct: 147 RCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYL 206

Query: 405 XXXSCWHVNDAGI 443
               C  + D G+
Sbjct: 207 NISWCDAIQDRGV 219



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 153 WARIVVFEWMLQRH*RSTSQRVCCRAAG--IEKT*FSLCKQVTDSSLGRIAQSLKNLEEL 326
           W R+ +F +  QR  ++       R  G  +++     C+ V DS+L        NLE L
Sbjct: 97  WQRVDLFTF--QRDVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHL 154

Query: 327 ELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPELEHLGL 503
            L  C  +TD     +             +C  + D  + ++   G+  G P L +L +
Sbjct: 155 SLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYI---GD--GCPNLSYLNI 208


>L14745-1|AAM15540.1|  466|Caenorhabditis elegans Hypothetical
           protein C02F5.7b protein.
          Length = 466

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 30/100 (30%), Positives = 41/100 (41%)
 Frame = +3

Query: 204 TSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
           T Q +   A  +E    S C Q++D SL  + Q   NL+ LEL GC  + D G + +A G
Sbjct: 270 TVQNIANGATALEYLCMSNCNQISDRSLVSLGQHSHNLKVLELSGCTLLGDNGFIPLARG 329

Query: 384 XXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPELEHLGL 503
                      C  ++D  I  L     A     L H  L
Sbjct: 330 CRQLERLDMEDCSLISDHTINSLANNCTALRELSLSHCEL 369



 Score = 34.3 bits (75), Expect = 0.054
 Identities = 20/73 (27%), Positives = 29/73 (39%)
 Frame = +3

Query: 225 RAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXX 404
           R   +E      CK+VTD+S   + +    L  L L  C +ITD  +  I  G       
Sbjct: 147 RCPNLEHLSLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYIGDGCPNLSYL 206

Query: 405 XXXSCWHVNDAGI 443
               C  + D G+
Sbjct: 207 NISWCDAIQDRGV 219



 Score = 28.7 bits (61), Expect = 2.7
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
 Frame = +3

Query: 153 WARIVVFEWMLQRH*RSTSQRVCCRAAG--IEKT*FSLCKQVTDSSLGRIAQSLKNLEEL 326
           W R+ +F +  QR  ++       R  G  +++     C+ V DS+L        NLE L
Sbjct: 97  WQRVDLFTF--QRDVKTAVVENLARRCGGFLKELSLKGCENVHDSALRTFTSRCPNLEHL 154

Query: 327 ELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPELEHLGL 503
            L  C  +TD     +             +C  + D  + ++   G+  G P L +L +
Sbjct: 155 SLYRCKRVTDASCENLGRYCHKLNYLNLENCSSITDRAMKYI---GD--GCPNLSYLNI 208


>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +3

Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
           V D  +GRI   L NLE L+L GC  I+  GL+
Sbjct: 212 VDDWCIGRIGGLLPNLEMLDLSGCHRISSKGLM 244


>Z48809-8|CAA88748.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 207 SQRVCCRAAG--IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAW 380
           S  VC +  G  I    F L  ++TD  L ++  + K +E++ L  C N+T+ G   +  
Sbjct: 49  STLVCSKYFGCNIPSLTFYLSAELTDEMLNQLTTNNKYVEKITLVDCPNVTNLGAQAVTT 108

Query: 381 G 383
           G
Sbjct: 109 G 109


>Z48795-8|CAA88732.2|  535|Caenorhabditis elegans Hypothetical
           protein T01E8.1 protein.
          Length = 535

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +3

Query: 207 SQRVCCRAAG--IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAW 380
           S  VC +  G  I    F L  ++TD  L ++  + K +E++ L  C N+T+ G   +  
Sbjct: 49  STLVCSKYFGCNIPSLTFYLSAELTDEMLNQLTTNNKYVEKITLVDCPNVTNLGAQAVTT 108

Query: 381 G 383
           G
Sbjct: 109 G 109


>Z98877-6|CAD56617.1|  432|Caenorhabditis elegans Hypothetical
           protein Y69H2.3d protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 523 C*PLASCKPKCSSSGVPLASPPQHRWAIPASLTCQ 419
           C P+ +C+PK      PL  P + R A P+ +T +
Sbjct: 259 CNPIPTCRPKDLRLIKPLIQPRERRQAGPSCMTAR 293


>Z98877-3|CAB54472.2|  537|Caenorhabditis elegans Hypothetical
           protein Y69H2.3a protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 523 C*PLASCKPKCSSSGVPLASPPQHRWAIPASLTCQ 419
           C P+ +C+PK      PL  P + R A P+ +T +
Sbjct: 364 CNPIPTCRPKDLRLIKPLIQPRERRQAGPSCMTAR 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,273,608
Number of Sequences: 27780
Number of extensions: 207149
Number of successful extensions: 481
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)