Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021794X
(523 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23340.1 68418.m02730 expressed protein 49 2e-06
At2g25490.1 68415.m03052 F-box family protein (FBL6) contains si... 49 2e-06
At5g25350.1 68418.m03007 F-box family protein contains Pfam PF00... 45 4e-05
At5g27920.1 68418.m03354 F-box family protein contains similarit... 42 3e-04
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si... 42 3e-04
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155... 40 8e-04
At1g21410.1 68414.m02679 F-box family protein similar to SKP1 i... 40 8e-04
At3g58530.1 68416.m06524 F-box family protein-related contains w... 40 0.001
At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1... 38 0.003
At3g54650.1 68416.m06046 F-box family protein (FBL17) contains s... 35 0.029
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 33 0.088
At3g27290.1 68416.m03411 F-box family protein-related contains w... 32 0.20
At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s... 32 0.20
At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family pr... 31 0.36
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s... 31 0.47
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s... 31 0.47
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 30 0.82
At4g17980.1 68417.m02676 no apical meristem (NAM) family protein... 30 0.82
At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7% ident... 30 0.82
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr... 30 1.1
At5g67140.1 68418.m08464 F-box family protein similar to unknown... 29 1.4
At5g40470.1 68418.m04908 expressed protein 29 1.9
At2g06030.1 68415.m00660 expressed protein 29 1.9
At5g21900.1 68418.m02539 expressed protein 29 2.5
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s... 28 3.3
At2g17020.1 68415.m01962 F-box family protein (FBL10) contains s... 28 3.3
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 27 5.8
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 27 5.8
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00... 27 5.8
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li... 27 7.7
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 27 7.7
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 27 7.7
>At5g23340.1 68418.m02730 expressed protein
Length = 405
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C+ +TD SL +++ ++LE L L GC NITD+GL + G C +V DAG
Sbjct: 160 CRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVGDAG 219
Query: 441 IA 446
++
Sbjct: 220 VS 221
Score = 40.7 bits (91), Expect = 6e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
S C++++D L +A+ +L L L GC ITD L ++ C ++ D
Sbjct: 132 SYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITD 191
Query: 435 AGIAHLCCG 461
+G+A L G
Sbjct: 192 SGLADLVKG 200
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
C +V + S+ +AQ KNLE L +GGC +I+D ++L+A
Sbjct: 239 CYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLA 277
Score = 38.3 bits (85), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
CK +TD+ L I + L L+ L++ C ++D GL +A G C + D
Sbjct: 108 CKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSAVAEGCHDLRALHLAGCRFITDES 167
Query: 441 IAHLCCGGEARGTPELEHLGLQ 506
+ L + +LE LGLQ
Sbjct: 168 LKSL-----SERCRDLEALGLQ 184
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDT 359
C ++DSSL I + KNLE L++G C +TDT
Sbjct: 292 CLNISDSSLSCILKQCKNLEALDIGCCEEVTDT 324
Score = 35.5 bits (78), Expect = 0.022
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
VTDS L I++ K L L L C ITDTGL I C ++D G++
Sbjct: 85 VTDSDLAVISEGFKFLRVLNLHNCKGITDTGLASIGRCLSLLQFLDVSYCRKLSDKGLSA 144
Query: 450 LCCG 461
+ G
Sbjct: 145 VAEG 148
Score = 33.1 bits (72), Expect = 0.12
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
C +TDS L + + + ++ L++ C N+ D G+ +A
Sbjct: 186 CTNITDSGLADLVKGCRKIKSLDINKCSNVGDAGVSSVA 224
>At2g25490.1 68415.m03052 F-box family protein (FBL6) contains
similarity to grr1 GI:2407790 from [Glycine max]
Length = 628
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/74 (40%), Positives = 35/74 (47%)
Frame = +3
Query: 231 AGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXX 410
A +EK + C +TD L IA+S NL EL L C I D GLL IA
Sbjct: 203 AQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSI 262
Query: 411 XSCWHVNDAGIAHL 452
+C V D GIA L
Sbjct: 263 KNCPLVRDQGIASL 276
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
+TD+ L IA+ LE+LEL C ITD GL+ IA +C + D G+
Sbjct: 190 ITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGL 247
Score = 36.7 bits (81), Expect = 0.009
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 231 AGIEKT*FSLCKQVTDSSLGRI-AQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXX 407
+ + K FS C +TD + I A++ LE L + GC NITD L+ IA
Sbjct: 491 SSLVKINFSGCSNLTDRVISAITARNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLD 550
Query: 408 XXSCWHVNDAGIAHL 452
C ++D+GI L
Sbjct: 551 ISKC-AISDSGIQAL 564
Score = 34.3 bits (75), Expect = 0.050
Identities = 25/80 (31%), Positives = 34/80 (42%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIA 446
+V+D L I +S +L L L ITD GLL IA G C + D G+
Sbjct: 163 KVSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLV 222
Query: 447 HLCCGGEARGTPELEHLGLQ 506
+ A+ P L L L+
Sbjct: 223 AI-----AKSCPNLTELTLE 237
>At5g25350.1 68418.m03007 F-box family protein contains Pfam
PF00646: F-box domain and Pfam PF00560: Leucine Rich
Repeat (6 copies); similar to F-box protein FBL6
(GI:4432860) [Homo sapiens]
Length = 623
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXS 416
IEK S C +TDS L IA++ NL +L + C + + GL IA S
Sbjct: 195 IEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRS 254
Query: 417 CWHVNDAGIAHL 452
C + D G+A L
Sbjct: 255 CPRIGDQGVAFL 266
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
V+D L IA+S +E+L+L C ITD+GL+ IA SC V + G+
Sbjct: 180 VSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGL 237
Score = 33.1 bits (72), Expect = 0.12
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 GIEKT*FSLCKQVTDSSLGRIAQSL-KNLEELELGGCCNITDTGLLLIA 377
G+ K S C V+D+++ I+ + LE L L GC NIT+ L+ +A
Sbjct: 486 GLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNITNASLVAVA 534
>At5g27920.1 68418.m03354 F-box family protein contains similarity
to leucine-rich repeats containing F-box protein FBL3
GI:5919219 from [Homo sapiens]
Length = 642
Score = 41.5 bits (93), Expect = 3e-04
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
V+DSSL ++ S ++L E+ L C ++TD G++ +A C V D I+
Sbjct: 312 VSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISA 371
Query: 450 LCCGGEARGTPELEHLGLQDAKG 518
+ GT +LE L KG
Sbjct: 372 VAQSCRNLGTLKLESCHLITEKG 394
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
S C ++TD+ + +I Q L+ L LEL G NIT GL IA G C +++D
Sbjct: 488 SYCCELTDTGVEQIRQ-LELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCENIDD 546
Query: 435 AG 440
+G
Sbjct: 547 SG 548
Score = 35.5 bits (78), Expect = 0.022
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
S C VTD + +A++ NL+ L L C +TD + +A SC + +
Sbjct: 333 SRCVDVTDIGMISLARNCLNLKTLNLACCGFVTDVAISAVAQSCRNLGTLKLESCHLITE 392
Query: 435 AGIAHLCC 458
G+ L C
Sbjct: 393 KGLQSLGC 400
Score = 33.9 bits (74), Expect = 0.067
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +3
Query: 210 QRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXX 389
Q + C + +++ + C V D L I++ NL+ L+LG C NI+D G+ I
Sbjct: 396 QSLGCYSMLVQELDLTDCYGVNDRGLEYISKC-SNLQRLKLGLCTNISDKGIFHIGSKCS 454
Query: 390 XXXXXXXXSCWHVNDAGIAHLCCG 461
C D G+A L G
Sbjct: 455 KLLELDLYRCAGFGDDGLAALSRG 478
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
C D L +++ K+L L L CC +TDTG+
Sbjct: 464 CAGFGDDGLAALSRGCKSLNRLILSYCCELTDTGV 498
Score = 30.3 bits (65), Expect = 0.82
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 258 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
LC+ + DS +A KNL ++ L C+++DT L ++
Sbjct: 540 LCENIDDSGFWALAYFSKNLRQINLCN-CSVSDTALCML 577
>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 665
Score = 41.5 bits (93), Expect = 3e-04
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +3
Query: 258 LCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDA 437
+C +TD L I NL EL+L ITD G+ IA G C + D
Sbjct: 440 ICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDK 499
Query: 438 GIAHLC-CG----GEARGTPELEHLGL 503
+ L C E+RG P + GL
Sbjct: 500 SLVSLSKCSLLQTFESRGCPNITSQGL 526
Score = 38.7 bits (86), Expect = 0.002
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXS 416
+E S C+ +TD SL +++ L+ E GC NIT GL IA
Sbjct: 485 LETINISYCQDITDKSLVSLSKC-SLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKK 543
Query: 417 CWHVNDAGIAHL 452
C +NDAG+ L
Sbjct: 544 CPSINDAGLLAL 555
Score = 37.1 bits (82), Expect = 0.007
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 198 RSTSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
R V A +E+ CK +TD +G IA K L + L C + D G+ L+A
Sbjct: 139 RDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCVGVGDLGVGLLA 198
Score = 33.9 bits (74), Expect = 0.067
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +3
Query: 213 RVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXX 392
R+ + + + S ++ D+ +A++ ++LE L+LG C +TD G+ IA G
Sbjct: 119 RLALKCVNLVEIDLSNATEMRDADAAVVAEA-RSLERLKLGRCKMLTDMGIGCIAVGCKK 177
Query: 393 XXXXXXXSCWHVNDAGIAHLCCGGEARGTPELEHL 497
C V D G+ L + T +L +L
Sbjct: 178 LNTVSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYL 212
Score = 33.9 bits (74), Expect = 0.067
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIA 446
++ D L I+ L +L L+LG C NITD GL I G + D GI+
Sbjct: 418 EIDDEGLKSISSCL-SLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGIS 476
Query: 447 HLCCG 461
+ G
Sbjct: 477 TIAQG 481
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +3
Query: 306 LKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHLCCGGEARGTPE 485
L++LEEL L GC + D L + SC ++ G+ L G +
Sbjct: 225 LQHLEELLLEGCFGVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLD 284
Query: 486 LEH 494
L H
Sbjct: 285 LSH 287
>At1g77000.1 68414.m08967 F-box family protein similar to
GP|21554029| F-box protein AtFBL5 from [Arabidopsis
thaliana]; similar to F-box protein FBL2 GI:6063090 from
[Homo sapiens]
Length = 360
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
V+D++L I ++ L+ L LG C NI+D G++ +A+G SC + D +
Sbjct: 183 VSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVA 242
Query: 450 L 452
L
Sbjct: 243 L 243
Score = 33.5 bits (73), Expect = 0.088
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIA 446
Q+ D+++ IA L++L+L ITD L +A G C +D +A
Sbjct: 103 QLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALA 162
Query: 447 HL 452
HL
Sbjct: 163 HL 164
Score = 33.5 bits (73), Expect = 0.088
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
S ++TD SL +A+ NL +L L GC + +DT L
Sbjct: 125 SKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTAL 161
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
C +TD S+ +A +L L L C NITD + +A
Sbjct: 232 CVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLA 270
>At1g21410.1 68414.m02679 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 40.3 bits (90), Expect = 8e-04
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 264 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
K VTD++L I + ++ L LG C NI+D G++ +A+G C + D +
Sbjct: 181 KAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESV 240
Query: 444 AHL 452
L
Sbjct: 241 VAL 243
Score = 30.3 bits (65), Expect = 0.82
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C+ ++D + +A +L L+L GC ITD ++ +A C ++ D
Sbjct: 206 CENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRA 265
Query: 441 IAHLCCGG 464
+ L G
Sbjct: 266 MYSLAQSG 273
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
++TD SL +A +L +L L GC + +DT +
Sbjct: 129 KITDRSLYALAHGCPDLTKLNLSGCTSFSDTAI 161
>At3g58530.1 68416.m06524 F-box family protein-related contains weak
similarity to F-box protein FBL2 (GI:6010699) [Rattus
norvegicus]
Length = 353
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
CK +TD S+ +A+S +LE L + C ITD GLL +
Sbjct: 173 CKSLTDKSMQLVAESYPDLESLNITRCVKITDDGLLQV 210
Score = 34.7 bits (76), Expect = 0.038
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
+VTD+ + + ++ +++ +L L GC ++TD + L+A C + D G+
Sbjct: 149 RVTDAGIRNLVKNCRHITDLNLSGCKSLTDKSMQLVAESYPDLESLNITRCVKITDDGL 207
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 356
+E + C ++TD+ + IA S +LE L L G +TD
Sbjct: 267 LESLNLTWCVRITDAGVNTIANSCTSLEFLSLFGIVGVTD 306
>At1g55590.1 68414.m06363 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 607
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
CK ++DS L ++ +L+ L L L G ++TD+G+L + C V+D G
Sbjct: 398 CKSISDSCLNSVS-ALRKLTSLNLAGA-DVTDSGMLALGKSDVPITQLSLRGCRRVSDRG 455
Query: 441 IAHL 452
I++L
Sbjct: 456 ISYL 459
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQS----LKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHV 428
C++V+D + + + K L L+LG I+D + I SC+HV
Sbjct: 448 CRRVSDRGISYLLNNEGTISKTLSTLDLGHMPGISDRAIHTITHCCKALTELSIRSCFHV 507
Query: 429 NDAGIAHL 452
D+ I L
Sbjct: 508 TDSSIESL 515
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 264 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTG 362
K++ D + ++++ K LE + LGG ++D G
Sbjct: 296 KRINDMGIFLLSEACKGLESVRLGGFPKVSDAG 328
>At3g54650.1 68416.m06046 F-box family protein (FBL17) contains
similarity to F-box protein FBL2 GI:6010699 from [Rattus
norvegicus]
Length = 593
Score = 35.1 bits (77), Expect = 0.029
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
+TD+S+ I+ KNLE L+L G +ITDTGL +I
Sbjct: 365 ITDASVAAISSGYKNLELLDLSG-SSITDTGLGMI 398
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 33.5 bits (73), Expect = 0.088
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +3
Query: 273 TDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAHL 452
T SLG +A NLE L L GC D L IA +C ++D GI +L
Sbjct: 350 TTLSLGMLAAKCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNC-PISDVGIENL 408
Query: 453 CCGGEARGTPELEHLGLQDAKG 518
A G P L + ++ KG
Sbjct: 409 -----ANGCPGLTKVKIKKCKG 425
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
+ D +L +I+ +NL+ L+L C +TD G+ A
Sbjct: 117 IGDEALVKISLRCRNLKRLKLRACRELTDVGMAAFA 152
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = +3
Query: 213 RVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGC 341
++ R +++ C+++TD + A++ K+L+ G C
Sbjct: 124 KISLRCRNLKRLKLRACRELTDVGMAAFAENCKDLKIFSCGSC 166
>At3g27290.1 68416.m03411 F-box family protein-related contains weak
similarity to PPA [Mus musculus] GP|18568225|gb|AAL75967
Length = 382
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 QVTDSSLGRIAQ-SLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
+VTD SL ++ + +L + L LGGC ITD GL + C ++ AG+
Sbjct: 177 RVTDESLLKLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLTKLSVSGCLRLSTAGL 236
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 147 FTWARIVVFEWMLQRH*RSTSQRVCCRAA--GIEKT*FSLCKQVTDSSLGRIAQSLKNLE 320
F W I + + LQ S R A G+ C +TD L ++ S +L
Sbjct: 162 FFWTSIDLNDSFLQYRVTDESLLKLTRRALGGVRCLNLGGCVGITDYGLKQVLASNPHLT 221
Query: 321 ELELGGCCNITDTGLL 368
+L + GC ++ GL+
Sbjct: 222 KLSVSGCLRLSTAGLV 237
>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
similarity to leucine-rich repeats containing F-box
protein FBL3 GI:5919219 from [Homo sapiens]
Length = 785
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
+T+ L + QS NL EL L GC ++T +I+ G C + + G+A
Sbjct: 620 MTNDDLLVLTQSCPNLTELSLVGCLHLTSDCQPIISAGWPGMISLHLEECGSITENGVAS 679
Query: 450 L 452
L
Sbjct: 680 L 680
>At3g60350.1 68416.m06749 armadillo/beta-catenin repeat family
protein / F-box family protein contains Pfam profiles
PF00514: Armadillo/beta-catenin-like repeat, PF00646:
F-box domain; similar to F-box protein FBL2 (GI:6010699)
[Rattus norvegicus]
Length = 928
Score = 31.5 bits (68), Expect = 0.36
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGG--CCNITDTGLLLIAWGXXXXXXXXXXSCWHVND 434
C+++TD++L IA + LE L+LG C IT + +IA+ V+
Sbjct: 135 CRKITDATLSMIAARHEALESLQLGPDFCERITSDAIRVIAFCCPKLKKLRVSGMRDVSS 194
Query: 435 AGIAHLCCGGEARGTPELEHLGLQD 509
I L A+ P+L LG D
Sbjct: 195 EAIESL-----AKHCPQLSDLGFLD 214
>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
+LC +V S + + +NL++L + C N+ D GLL + G
Sbjct: 303 ALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCG 345
>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 31.1 bits (67), Expect = 0.47
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
+LC +V S + + +NL++L + C N+ D GLL + G
Sbjct: 303 ALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALRCG 345
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 30.3 bits (65), Expect = 0.82
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGC 341
C+++TD + A++ KNL++L +G C
Sbjct: 143 CREITDLGMEDFAKNCKNLKKLSVGSC 169
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGL 365
++D +L I+ NL ++L GC ITD G+
Sbjct: 120 LSDEALAMISVRCLNLTRVKLRGCREITDLGM 151
>At4g17980.1 68417.m02676 no apical meristem (NAM) family protein
NAM (GI:6066595) [Petunia x hybrida]
Length = 262
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 252 FSLCKQVTDSSLGRIAQSLKNLEELELGGC 341
F+LC+ V + L + ++SLKN E ++G C
Sbjct: 152 FALCRVVKKNELKKNSKSLKNKNEQDIGSC 181
>At4g15475.1 68417.m02365 F-box family protein (FBL4) 99.7%
identical to F-box protein family, AtFBL4 (GP:21536497)
[Arabidopsis thaliana]; similar to grr1 GI:2407790 from
[Glycine max]
Length = 610
Score = 30.3 bits (65), Expect = 0.82
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGIAH 449
+TD+ L +A +E L L C N++ GL +A C +V D G+A
Sbjct: 127 LTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGC-YVGDQGLAA 185
Query: 450 LCCGGEARGTPELEHLGLQDAKG 518
+ + +LE L L+ +G
Sbjct: 186 V-----GKFCKQLEELNLRFCEG 203
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAG 440
C +V + +L I + +L++L + GC I+D G+ IA G ++ D
Sbjct: 460 CDKVGNKALIAIGKGC-SLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMP 518
Query: 441 IAHLCCGGEARGTPELEHLGL 503
+A L GE G P L+ L L
Sbjct: 519 LAEL---GE--GCPMLKDLVL 534
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
V D L + + K LEEL L C +TD G++ + G
Sbjct: 178 VGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVG 215
>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
protein / F-box family protein contains similarity to
F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
contains Pfam profiles PF00514:
Armadillo/beta-catenin-like repeat, PF00646: F-box
domain
Length = 930
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +3
Query: 156 ARIVVFEWMLQRH*RSTSQRVCCRAAGIEKT*FSLCKQVTDSSLGRIAQSLKNLEELELG 335
+R V ++ R S + +A + + CK++TD++L I + LE L+LG
Sbjct: 107 SRCVNLHYLRFRGVESADSLIHLKARNLIEVSGDYCKKITDATLSMIVARHEALESLQLG 166
Query: 336 G--CCNITDTGLLLIAW 380
C IT + +A+
Sbjct: 167 PDFCERITSDAIKAVAF 183
>At5g67140.1 68418.m08464 F-box family protein similar to unknown
protein (dbj|BAA78736.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 228
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWGXXXXXXXXXXSCWHVNDAGI 443
+TDS + ++ +L+ L +GG ITD L IA C HV + G+
Sbjct: 116 ITDSGVVQLISRTSSLQHLNIGGTF-ITDESLFAIAERCHQLKTIGMWCCRHVTERGL 172
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
+TD SL IA+ L+ + + C ++T+ GLL++
Sbjct: 141 ITDESLFAIAERCHQLKTIGMWCCRHVTERGLLVL 175
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +3
Query: 267 QVTDSSLGRIAQSLKNLEELELGGC---CNITDTGLLLIA 377
++ D S R+ NL+EL++ C+ITD GL IA
Sbjct: 58 KMDDDSTSRLVHLAFNLKELDISRSRWGCHITDNGLYQIA 97
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 282 SLGR-IAQSLKNLEELELGGCCNITDTGLLLIA 377
S+G I LKNLEE+EL C +I D LL ++
Sbjct: 239 SIGEEIGLCLKNLEEIELRTCRSIVDVVLLKVS 271
>At2g06030.1 68415.m00660 expressed protein
Length = 243
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 255 SLCKQVTDSSLGRIAQSLKNLEELELGGCCNITD 356
S C+++++ LG I + +L+ L++ GC +TD
Sbjct: 182 SWCREMSNDLLGYIVDNSSSLKVLKVFGCSQVTD 215
>At5g21900.1 68418.m02539 expressed protein
Length = 544
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIAWG 383
C +VTD + I + K LE L++ +TD L I G
Sbjct: 372 CNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEG 412
>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
similarity to SKP1 interacting partner 1 GI:10716947
from [Arabidopsis thaliana]
Length = 301
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 264 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLIA 377
+ T+ SL A+ NLE L + C N+TD + IA
Sbjct: 109 RHCTERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIA 146
>At2g17020.1 68415.m01962 F-box family protein (FBL10) contains
similarity to F-box protein Partner of Paired
GI:10441427 from [Drosophila melanogaster]
Length = 656
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 264 KQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
++V+D + +A +E + LGG C +TD G I
Sbjct: 311 RRVSDQGMLFLADKCLGMETICLGGFCRVTDAGFKTI 347
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 237 IEKT*FSLCKQVTDSSLGRIAQSLKNLEELELGGCCNIT 353
+E S C V+D +L IAQ+ NL L C NI+
Sbjct: 394 LESLDVSNCSCVSDETLREIAQACANLHILNASYCPNIS 432
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGC 341
C+++TD + A++ K+L +L G C
Sbjct: 141 CREITDLGMESFARNCKSLRKLSCGSC 167
>At3g26000.1 68416.m03239 F-box family protein contains Pfam
PF00646: F-box domain; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 453
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 261 CKQVTDSSLGRIAQSLKNLEELELGGCCNITDTGLLLI 374
C ++TD L R+ + + ++ + GC IT G+L +
Sbjct: 274 CCRITDDCLKRVVARNRQVVKIGVPGCTRITIDGILSV 311
>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
light-insensitive protein, putative similar to ULI3
(UV-B light insensitive) [Arabidopsis thaliana]
GI:17225050; contains Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +3
Query: 423 HVNDAGIAHLCCGGEARG 476
H ND I LCCG EA G
Sbjct: 536 HSNDEHILTLCCGEEANG 553
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 315 SSLTIERFFRVKSPLPVCKVKIKSFQCRQLGSKRAG 208
SSL IERF R +S P+ + + Q+GS R G
Sbjct: 632 SSLEIERFVREESSKPLKDLSGQICSAHQMGSCRMG 667
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 270 VTDSSLGRIAQSLKNLEELELGGCCNITDTGLL 368
+ D++ I+ +NL L+L GC I+D G++
Sbjct: 151 ICDNAFVMISVRCRNLTRLKLRGCPEISDLGII 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,775,031
Number of Sequences: 28952
Number of extensions: 196256
Number of successful extensions: 613
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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