Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021793
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.8  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   5.8  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   7.7  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -2

Query: 678  EIVETVYRHVVLRDEGRHLELVARHDGVQVLDAGQTVDLG 559
            +++   ++H  +      ++ +  +D V VLD+G+TV+ G
Sbjct: 1365 QMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFG 1404


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = +2

Query: 191 QVRRPERGIWDRMS---VSERRGSMGRP 265
           QV  PE+GIW  +S   V +  G  GRP
Sbjct: 871 QVYSPEKGIWTELSPQDVLQMLGRAGRP 898


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 268 GRLHREMVPHR-GHRLGKGTPVPDQTPGSDRARRLRDRVLS 387
           G L R + P +    +G+G PVP+  PG   A    D  ++
Sbjct: 350 GSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVT 390


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 32  ELPTDLSQVIKQNKKQNGDGHYGSGIARFNHN 127
           +LPTD+   + +  +    G+ G  +A FN N
Sbjct: 506 DLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRN 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,176
Number of Sequences: 5004
Number of extensions: 44964
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)