Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021793
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 63 2e-10
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638 41 8e-04
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 41 0.001
02_05_0251 - 27155905-27156127,27156228-27156697 39 0.004
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 30 2.0
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478... 29 3.4
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 29 3.4
03_02_0717 - 10643285-10643584,10643877-10644020,10646241-106463... 29 4.5
02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087 29 4.5
03_05_0114 - 20970633-20970726,20971405-20971580 28 6.0
09_04_0258 - 16175258-16176069,16176111-16176414 28 7.9
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 28 7.9
08_01_0289 - 2332454-2333011 28 7.9
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/87 (33%), Positives = 47/87 (54%)
Frame = +2
Query: 251 SMGRPVVVFIGKWFPIGDIDXXXXXXXXXXXXDPIVRGDYVIAYFHTLASSANHPPFSWL 430
S GRPV+V +G F + +D +P+++ Y I YFH+ AS P ++
Sbjct: 442 SEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFM 501
Query: 431 KEVYTVLPYKYKKNLKAFYIVHPTFWL 511
K + +L K+++NL A Y++HPT L
Sbjct: 502 KRLQQILGRKHQRNLHAIYVLHPTLGL 528
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 538 FMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFVTEYDMTING 666
F+ + KV + + +L+ +PR+QL +P FV ++D+ +NG
Sbjct: 538 FVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVNG 580
>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
Length = 272
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 362 GDYVIAYFH-TLASSANHPPFSWLKEVYTVLPYKYKKNLKAFYIVHP 499
G + + Y H T+ S N+P S L+ VY LP +YK+ L+ Y +HP
Sbjct: 125 GPFCLLYMHSTVQSDDNNPGMSILRGVYEDLPPEYKERLQILYFLHP 171
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +2
Query: 347 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLPYKYKKNL--------KAFYIVHPT 502
+P+++ Y I YFH+ AS P ++K + +L K+++NL A Y++HPT
Sbjct: 327 EPLIQKPYSIVYFHSAASLQVRPDLGFMKRLQQILGRKHQRNLHVGISYDHTAIYVLHPT 386
Query: 503 FWL 511
L
Sbjct: 387 LGL 389
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +1
Query: 538 FMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFVTEYDMTING 666
F+ + KV + + L+ +PR+QL +P FV ++D+ +NG
Sbjct: 399 FVDGEVWKKVIYVDRLVQLFRYVPREQLTIPDFVFQHDLEVNG 441
>02_05_0251 - 27155905-27156127,27156228-27156697
Length = 230
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 365 DYVIAYFHTLASSA-NHPPFSWLKEVYTVLPYKYKKNLKAFYIVHPTF 505
++V+ Y H+L N P + ++ Y LP K+ L+A Y VHP F
Sbjct: 93 EFVVVYVHSLVDRGDNFPGVAAIRAAYEALPAAAKERLRAVYFVHPGF 140
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/57 (38%), Positives = 27/57 (47%)
Frame = +1
Query: 256 GSARGRLHREMVPHRGHRLGKGTPVPDQTPGSDRARRLRDRVLSHAGLVGEPSALLV 426
GS R R+ R R TP P+ T S+RARR R R S + P AL+V
Sbjct: 298 GSPRARVLTPEPATRSPRARVQTPEPEPTASSERARRPRKR--SSLRFLVAPLALVV 352
>11_01_0600 -
4780579-4780839,4781256-4781324,4781535-4781598,
4781791-4781919,4782234-4782541
Length = 276
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 229 VCIRAAWIDGSARGRLHREMVPHRGHRLGKGTPVPDQ 339
+C R AWI G + +HR+ P R GK +PD+
Sbjct: 114 ICGRIAWIPGRYQDLIHRKHHPQR----GKNRMIPDR 146
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +1
Query: 310 LGKGTPVPDQTPGSDRARRLRDRVLSHAGLVGEPSALLVAQGGVHGAALQIQEESESFLH 489
LG TP+ + G DR + R +H ++ + +A G G A + + +H
Sbjct: 461 LGGSTPIAVKKLGGDRQGEKQFRAENHTTILNWSTRYQIALGAARGLAYLHESCRDCIIH 520
Query: 490 C 492
C
Sbjct: 521 C 521
>03_02_0717 -
10643285-10643584,10643877-10644020,10646241-10646321,
10646506-10646589
Length = 202
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -3
Query: 671 WRPFIVMSYSVTKAGTSSWSRGMTEYRYSTPGRLWTLAFIAGAMNVVNH 525
W + + + K + G+T +Y+ P R + +AF+ N +NH
Sbjct: 52 WGHMVRVYQLLLKGRDALMKLGITGKKYTQPARCYMIAFVLVYTNTINH 100
>02_04_0606 + 24297392-24299241,24299424-24299484,24299626-24300087
Length = 790
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -2
Query: 366 SPRTIGSRSLIRYRSAFSKSMSPMGNHFPMKTTTGRPIDPRRS 238
SPR++ + + S ++ M+P + PM + RP+ PRR+
Sbjct: 192 SPRSVAPAAPMTPMSTSARPMTPTMSARPMTPMSARPMTPRRA 234
>03_05_0114 - 20970633-20970726,20971405-20971580
Length = 89
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -3
Query: 611 RGMTEYRYSTPGRL---WTLAFIAGAMNVVNHHVIILA 507
RG + +S P RL WT AF GA V+HH LA
Sbjct: 13 RGDSGVPHSDPQRLVTTWTGAFALGAAACVHHHASALA 50
>09_04_0258 - 16175258-16176069,16176111-16176414
Length = 371
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 543 GAGDKSQGPQSARRRVPVLRHAAR--PARGAGLRHGVRHDD 659
GA + Q P+ R+ LRHAA PAR RHG RHDD
Sbjct: 140 GAPEAEQ-PRGGAVRLRRLRHAAAVPPARQ---RHGRRHDD 176
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +1
Query: 496 SYVLAKMMTWWFTTFMA----PAIKAKVHSL-PGVEYLYSVMPRDQLEVPAFVTEY 648
SY A +WW T +A P++ +L G +YS P L +PAF+ ++
Sbjct: 707 SYCNADHASWWELTALALHVHPSVSTMARTLLSGNNIVYSGDPLTDLSLPAFLDKF 762
>08_01_0289 - 2332454-2333011
Length = 185
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 334 DQTPGSDRARRLRDRVLSHAGLVGEPSALLVAQGGVHGAALQI 462
D+ PG D +R + S A V E + LL+ GG H Q+
Sbjct: 120 DRLPGCDITADIRVDLASAAAAVDECATLLLQNGGEHTTLYQM 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,241,646
Number of Sequences: 37544
Number of extensions: 365668
Number of successful extensions: 1194
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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