Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021793
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 79   3e-15
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               79   3e-15
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  

>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 32/54 (59%), Positives = 41/54 (75%)
 Frame = +2

Query: 347 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLPYKYKKNLKAFYIVHPTFW 508
           D IV  DYV+ YFHT ++  N PP S+LKE+Y ++  KY++NLKAFYIVHPT W
Sbjct: 300 DRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 353



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 31/58 (53%), Positives = 43/58 (74%)
 Frame = +1

Query: 502 VLAKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFVTEYDMTINGLHY 675
           V A+++TW+FTTF A ++K KVH L GV+YLY  +  DQL++PA+V EYDM I   +Y
Sbjct: 352 VWARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYDMKIFPSYY 409


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 32/54 (59%), Positives = 41/54 (75%)
 Frame = +2

Query: 347 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLPYKYKKNLKAFYIVHPTFW 508
           D IV  DYV+ YFHT ++  N PP S+LKE+Y ++  KY++NLKAFYIVHPT W
Sbjct: 10  DRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 63



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 31/58 (53%), Positives = 43/58 (74%)
 Frame = +1

Query: 502 VLAKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFVTEYDMTINGLHY 675
           V A+++TW+FTTF A ++K KVH L GV+YLY  +  DQL++PA+V EYDM I   +Y
Sbjct: 62  VWARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYDMKIFPSYY 119


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = +2

Query: 347 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLPYKYKKNLKAFY 487
           D  V  DY I YFH   +S N P FSWL ++Y  L  K+   +   Y
Sbjct: 187 DQYVESDYTIVYFHYGLTSKNKPNFSWLHQIYKELDRKHDARIAVRY 233


>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 570 QSARRRVPVLRHAARPAR-GAGLRHGVRHDDKRSPLFPA 683
           Q ARR     RHAARPA  G   R   R+++++  +FPA
Sbjct: 125 QFARRIYHNYRHAARPASVGHYCRQSFRNNNEQKRVFPA 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,503
Number of Sequences: 59808
Number of extensions: 371415
Number of successful extensions: 1417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)