Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021793
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-13|CAA91403.1| 444|Caenorhabditis elegans Hypothetical p... 69 2e-12
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 30 1.8
AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical... 29 2.3
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 29 3.1
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 29 3.1
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 28 7.1
U64598-3|AAK39213.1| 432|Caenorhabditis elegans Hypothetical pr... 28 7.1
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 28 7.1
U00066-4|AAM54165.2| 75|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z66521-13|CAA91403.1| 444|Caenorhabditis elegans Hypothetical
protein W02B12.8a protein.
Length = 444
Score = 69.3 bits (162), Expect = 2e-12
Identities = 36/84 (42%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +2
Query: 254 MGRPVVVFIGKWFPIG-DIDXXXXXXXXXXXXDPIVRGDYVIAYFHTLASSANHPPFSWL 430
+GRP+VV P +ID D IV DY I YFH S N PP WL
Sbjct: 91 VGRPIVVVYAYRLPSSKEIDHARLLQYLVQIIDKIVDQDYTIVYFHYGLRSHNKPPVRWL 150
Query: 431 KEVYTVLPYKYKKNLKAFYIVHPT 502
+ Y L ++KKNLKA Y+VHPT
Sbjct: 151 FQAYKQLDRRFKKNLKALYVVHPT 174
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 453 GSTVYTSLSHEKGGWFAD 400
G+TVYT + H+KGG+ D
Sbjct: 545 GTTVYTGMQHQKGGYVTD 562
>AL132862-34|CAB60536.2| 395|Caenorhabditis elegans Hypothetical
protein Y73F8A.11 protein.
Length = 395
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -2
Query: 675 IVETVYRHVVLRDEGRHLELVARHDGVQVLDAGQTVDLGFY 553
+V+ VYR+++ D+ + E A H V+++ T LGF+
Sbjct: 45 VVQMVYRYLMTEDQQKFFEYSAIHLNVRLIHIPLTFMLGFF 85
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 481 FLHCSSYVLAKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFV 639
F H + L +MM W+ F P I+ + ++P +Y P P FV
Sbjct: 1466 FRHQNFDTLDRMMAWFKRHFHEPPIELRRSAIPAPQYRVGAPPAAPYYPPQFV 1518
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 481 FLHCSSYVLAKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFV 639
F H + L +MM W+ F P I+ + ++P +Y P P FV
Sbjct: 1466 FRHQNFDTLDRMMAWFKRHFHEPPIELRRSAIPAPQYRVGAPPAAPYYPPQFV 1518
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 481 FLHCSSYVLAKMMTWWFTTFMAPAIKAKVHSLPGVEYLYSVMPRDQLEVPAFV 639
F H + L +MM W+ F P I+ + ++P +Y P P FV
Sbjct: 1466 FRHQNFDTLDRMMAWFKRHFHEPPIELRRSAIPAPQYRVGAPPAAPYYPPQFV 1518
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 672 VETVYRHVVLRDEGRHLELVARHDGVQVLDA 580
+ TV+ V LR E +LE++ HD V+ + A
Sbjct: 222 LNTVFHIVALRGEPEYLEMMMDHDPVEAIKA 252
>U64598-3|AAK39213.1| 432|Caenorhabditis elegans Hypothetical
protein C52B9.3a protein.
Length = 432
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 347 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVLP 454
+P++ + ++ HT+ + H PF L+ +VLP
Sbjct: 109 NPVIDHELPVSTLHTIILNGTHLPFKTLQSFLSVLP 144
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 672 VETVYRHVVLRDEGRHLELVARHDGVQVLDA 580
+ TV+ V LR E +LE++ HD V+ + A
Sbjct: 240 LNTVFHIVALRGEPEYLEMMMDHDPVEAIKA 270
>U00066-4|AAM54165.2| 75|Caenorhabditis elegans Hypothetical
protein R12B2.7 protein.
Length = 75
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 481 FLHCSSYVLAKMMTWWFTTFMAPAIKAKVHSL 576
F+ CS + +M ++FT+F+ P + K+ SL
Sbjct: 17 FIFCSLSISDLLMMYFFTSFVIPTLNDKLISL 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,826
Number of Sequences: 27780
Number of extensions: 274767
Number of successful extensions: 789
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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