Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021793
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.51 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.3  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 424 VAQGGVHGAALQIQEESESFLHCSSYVLAKMMTW 525
           V QG +HG + QIQ         S+ V+   + W
Sbjct: 250 VVQGAIHGDSRQIQSRKSVIKMLSAVVILFFICW 283


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 226 DVCIRAAWIDGSARGRLHREMVPHRGHRLGKGT 324
           DVC RA        G+LHR M  H G R  K T
Sbjct: 151 DVCERAF----EHSGKLHRHMRIHTGERPHKCT 179


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 319 GTPVPDQTPGSDRARRLRDRVLSHAGLVGEPSALLVAQGGVHGAALQIQEESES 480
           G   P        A R  D + +    VG PSA L  Q  V+G   Q Q  +E+
Sbjct: 69  GALFPGMAAAGKGAARSDDWLANANSPVGSPSAALQPQHVVYGNPQQQQLAAET 122


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +2

Query: 38  PTDLSQVIKQN 70
           P D SQVIKQN
Sbjct: 482 PNDKSQVIKQN 492


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 274 LHREMVPHRGHR 309
           LH  M  HRGHR
Sbjct: 155 LHHGMAYHRGHR 166


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -2

Query: 333 RYRSAFSKSMSPMGNHFPMKTTTGRPIDPRRSDTD 229
           RYR    K    MG H P  T+        +  TD
Sbjct: 342 RYRQELQKRCKWMGIHEPETTSDATSAQTEKIKTD 376


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 97 IVSIAILFFVLFYNLT 50
          +  IA+LF  L+Y LT
Sbjct: 8  LCGIAVLFLALYYYLT 23


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -2

Query: 333 RYRSAFSKSMSPMGNHFPMKTTTGRPIDPRRSDTD 229
           RYR    K    MG H P  T+        +  TD
Sbjct: 342 RYRQELQKRCKWMGIHEPETTSDATSAQTEKIKTD 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,602
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)