Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021792
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 48 8e-06
01_01_0550 + 4058600-4058878,4059485-4059652,4060306-4060552,406... 43 3e-04
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 35 0.063
06_03_0073 + 16229369-16230115,16230182-16230431,16230618-162307... 30 1.8
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 29 5.4
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 29 5.4
12_01_0778 + 7111562-7112152,7113034-7113157,7113252-7113395,711... 28 7.2
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 28 7.2
01_05_0309 - 20713774-20713818,20713838-20713915,20714044-207142... 28 7.2
05_03_0483 + 14585581-14587977 28 9.5
05_03_0117 + 8580270-8580677,8581541-8582328,8582412-8582663,858... 28 9.5
01_01_0987 + 7803281-7803910,7803989-7804510 28 9.5
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 48.0 bits (109), Expect = 8e-06
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +2
Query: 251 IKSPVVVQIQKIRNVSAP---KANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINT 421
+ P+V+Q+ +I N+SAP + + R LKL++ DG G+E I L +
Sbjct: 277 LDGPLVLQVDEIVNLSAPLRERYRDAHAGPKRCLKLSMTDGIQRIYGMEYRPIKDLEVLA 336
Query: 422 PPGTKLLLKNEELEVCHGVVWLTPSVISV 508
P G K++++N + + G+ L P VI +
Sbjct: 337 PAGFKIVIRN--VHIRRGLFMLVPEVIEI 363
>01_01_0550 +
4058600-4058878,4059485-4059652,4060306-4060552,
4061355-4061791
Length = 376
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Frame = +2
Query: 251 IKSPVVVQIQKIRNV--SAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTP 424
+ P+V+Q+ +R++ S A+ ++ R+L+ L DG +E IP + +
Sbjct: 86 LHGPIVLQVVSVRDIYRSIIDASFKNPQQHRLLRFVLTDGISEAVAIEFFPIPFIIEDIA 145
Query: 425 PGTKLLLKNEELEVCHGVVWLTPSVISV 508
PGTK+ L+N ++ + +G++ L+ IS+
Sbjct: 146 PGTKICLEN-KIPIHNGILCLSAKNISI 172
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 508 MGGTVSHMIEKWELNRSLAKHTRGGI----GAEG-GPPPW 612
MGG V + E+W++N+ + +R + +G GPPP+
Sbjct: 173 MGGVVQSLYEEWQMNQKFSGLSRSSLRLSQNDDGVGPPPF 212
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 35.1 bits (77), Expect = 0.063
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 559 LAKHTRGGIGAEGGPPPWIPFGQRLEAL-SVDKQFKSLQEAAKQDNPEFEAQRKGAIAEA 735
L + RGG GA GG PP P +R++ ++ + AA++D A +G A+A
Sbjct: 120 LERGVRGGRGARGGRPP--PPRRRIDLRGELELEIPDAAPAAEED--PAPAPARGGRADA 175
Query: 736 QRMSGVKKVLVV 771
+R +GV++V V
Sbjct: 176 RRANGVERVAAV 187
>06_03_0073 +
16229369-16230115,16230182-16230431,16230618-16230728,
16230768-16231153
Length = 497
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 511 GGTVSHMIEKWELNRSLAKHTRG--GIGAEGGPPPWIPFGQRLEALSVDKQFKSLQEAAK 684
GGT S M ++ N S K + + E G W+PF QR SVD+QF E +
Sbjct: 369 GGT-SGMSKETPSNNSADKEIQPEKNVPQEYGDTRWLPFPQRSRKPSVDEQFARFVEVIQ 427
Query: 685 Q 687
+
Sbjct: 428 K 428
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 57 LNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNI-LSKKALDYDLRDISEGSLPEDF 233
L+QN S+ W EEG++T+ + + I LSKK LD + +P D
Sbjct: 74 LHQNTSIESIDITDTWEPLEEGLNTLETTRHVSLITITLSKKELDTSSPGY-QPPIPADQ 132
Query: 234 VKDPS 248
V+ P+
Sbjct: 133 VRPPT 137
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 272 QIQKIRNVSAPKANEESTSAPRMLKLTLHDGK-VTCTGLEISHIPS 406
Q +K RN+S +A E S S PR ++T+ DG V + + +PS
Sbjct: 348 QCEKPRNISVIQAGEGSKSQPR--QITIDDGSPVASMNFDEAELPS 391
>12_01_0778 +
7111562-7112152,7113034-7113157,7113252-7113395,
7113485-7113630,7113716-7113838,7113922-7114089,
7114253-7114474,7114572-7114745
Length = 563
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 647 WTNSSRVYKKLPNRTIQNSRLKEKVLLLRHRGCLV 751
W N+SR Y + T+ KE L L H G LV
Sbjct: 525 WRNASRQYSRAVYNTLSRKIFKEVSLKLDHSGPLV 559
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 683 LAASCRLLNCLSTERASNLCPNGIHGGGPPSAPMPP 576
L A+C L+ + ++ P G GG P+AP+PP
Sbjct: 699 LVATCVLVRVKTVLSPESVLPRG-GSGGDPAAPLPP 733
>01_05_0309 - 20713774-20713818,20713838-20713915,20714044-20714222,
20714296-20714556,20715222-20715393,20715501-20715662,
20716435-20716863,20717729-20717785,20717872-20718842,
20719098-20719182,20719269-20719637,20719756-20720001,
20720090-20720362,20720663-20720827,20721328-20721556,
20721727-20722168,20723152-20724138,20724352-20724517,
20725070-20725728,20725820-20726186
Length = 2113
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 469 SRSGMAHPISDICMGGTVSHMIEKWELNRSLAKHTRGGIGAEGGPPPW 612
SR+ HP + + G+ + + WE + A T G + A PPP+
Sbjct: 1790 SRALSRHPSLPLLLVGSSNTHVYLWEFGKDSAMATYGVLPAANIPPPY 1837
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 653 LSTERASNLCPNGIHGGGPPSAPMPPLVCLARLLFSSHFSI 531
L + +++ P G+ GGG A +P +C +L ++ F +
Sbjct: 376 LPPQPKTDVNPKGVSGGGKLKAAVPAAICAVVVLITACFCV 416
>05_03_0117 +
8580270-8580677,8581541-8582328,8582412-8582663,
8582744-8582854,8582942-8583020,8583104-8583175,
8583253-8583420
Length = 625
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +1
Query: 541 WELNR---SLAKHTRGGIGAEGGPPPWIP 618
W + R +L H RG A GG PW+P
Sbjct: 56 WRVGRRRWALHGHRRGAARARGGVDPWVP 84
>01_01_0987 + 7803281-7803910,7803989-7804510
Length = 383
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 535 EKWELNRSLAKHTR-GGIGAEGGPPPWIP 618
E W + +L K+ R GG G GG PP +P
Sbjct: 23 EYWFFSNTLGKNGRHGGGGGGGGRPPMLP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,049,193
Number of Sequences: 37544
Number of extensions: 453955
Number of successful extensions: 1445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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