Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021792
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)                     35   0.063
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)              32   0.59 
SB_58233| Best HMM Match : Pentapeptide (HMM E-Value=1.8)              29   3.1  
SB_55832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_18489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_33450| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)                     28   9.6  

>SB_41007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +2

Query: 272 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 427
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 81  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQALTPP 140

Query: 428 GTKLLLKNE 454
           GTK+ L+ +
Sbjct: 141 GTKVCLQRD 149


>SB_4522| Best HMM Match : Plus-3 (HMM E-Value=3.8)
          Length = 123

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
 Frame = +2

Query: 272 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 427
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 61  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQPIPTLQALTPP 120

Query: 428 GTK 436
           GTK
Sbjct: 121 GTK 123


>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
          Length = 1269

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 556 SLAKHTRGGIGAEGGPPPWIPFGQ 627
           +LAKH+R     E GPPP++PF Q
Sbjct: 1   TLAKHSRTIPSGEEGPPPFVPFRQ 24


>SB_58233| Best HMM Match : Pentapeptide (HMM E-Value=1.8)
          Length = 516

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 749 PDILCASAIAPFL*ASNS---GLSCLAASCRLLNCLSTERASNLCPNG-IHGGGPPSAPM 582
           P + CA+A  P L  +N+   GL C  A    L+C +TE     C N  + G    +A +
Sbjct: 40  PGLDCANAELPGLDCANTELPGLDCANAELPGLDCANTELPGLDCANAELPGLDCANAEL 99

Query: 581 PPLVC 567
           P L C
Sbjct: 100 PGLDC 104



 Score = 28.7 bits (61), Expect = 5.5
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 749 PDILCASAIAPFL*ASNS---GLSCLAASCRLLNCLSTERASNLCPNG-IHGGGPPSAPM 582
           P + CA+A  P L  +N+   GL C  A    L+C +TE     C N  + G    +A  
Sbjct: 443 PGLDCANAELPGLDCANAELPGLDCAYAELPGLDCANTELPGLDCANAELPGLDCANAEQ 502

Query: 581 PPLVC 567
           P L C
Sbjct: 503 PGLDC 507



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 749 PDILCASAIAPFL*ASNS---GLSCLAASCRLLNCLSTERASNLCPNG-IHGGGPPSAPM 582
           P + CA+A  P L  +N+   GL C  A    L+C +TE     C N  + G    +  +
Sbjct: 20  PGLDCANAELPGLDCANAELPGLDCANAELPGLDCANTELPGLDCANAELPGLDCANTEL 79

Query: 581 PPLVC 567
           P L C
Sbjct: 80  PGLDC 84


>SB_55832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 689 SCLAASCRLLNCLS-TERASNLCPNGIHGGGPPSAPMP 579
           SC+  + R  +CLS +E  S +CP+    G PP   +P
Sbjct: 119 SCITQNDREDDCLSGSEVQSQICPSTTIAGSPPGGLVP 156


>SB_18489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = +2

Query: 272 QIQKIRNVSAPKAN--------EESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPP 427
           QI KI+    P+++        E    A RML   L DG      +E   IP+L   TPP
Sbjct: 61  QIMKIKGKDDPESHLDKKHTNWEPKVKASRMLFFQLSDGGQQIQAMEYQIIPTLQALTPP 120


>SB_33450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 636 F*SLSKWNPWWRTSFSSYASSCVFGKTSVQFPFFNHM 526
           F SL K N W R+ F   A   +  +TS + PFF H+
Sbjct: 9   FRSLGK-NGWSRSGFEYQAKQFLVPQTSRRSPFFRHL 44


>SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)
          Length = 288

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 263 VVVQIQKIRNVSAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLL 442
           V+  +++ R + A +  ++ T        T  +   T +GL+ +   S S  TP  T L 
Sbjct: 61  VLYTMERSRRIRAQRNTDDGTETRLRRVCTTKECVRTASGLQENENLSTSHTTPKSTTLY 120

Query: 443 LKN-EELEVCHGVVWLTPSVISVWAEQ 520
            K  +  +V + VV L P++IS   E+
Sbjct: 121 DKEGQSRKVLNSVVVL-PAIISAMDEK 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,948,325
Number of Sequences: 59808
Number of extensions: 505663
Number of successful extensions: 1494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)