Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021792
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   7.3  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    22   7.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 211 KDRYLKTLSRIRLN*KPRCCSNSE 282
           +D +LKT  R+    KP  CS+ +
Sbjct: 21  RDHHLKTHMRLHTGEKPYHCSHCD 44


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 143 WSNSRCKHS*QKSFRLRFERHQRRI 217
           W +   K+   K FR++FE   +++
Sbjct: 102 WDSLANKYDPDKKFRVKFEEEAKKL 126


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +2

Query: 410 SINTPPGTKLLLKNEELEVCHGVVWLTPSVISVWAEQ 520
           S+N+    K   +   L   H    +TP  I+ W ++
Sbjct: 410 SVNSTSSPKPFPRRATLAQLHNFTTMTPQEIAQWIDR 446


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 659 NCLSTERASNLCPNGIHGG 603
           NC++     N+ P GIH G
Sbjct: 54  NCITVCNMENVDPLGIHTG 72


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 772 PPPKPFSHQTSSVPQQ 725
           P P+P  HQ+   PQ+
Sbjct: 21  PGPQPSPHQSPQAPQR 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,626
Number of Sequences: 438
Number of extensions: 4594
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)