Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021791
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    29   0.49 
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    28   1.1  
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    26   4.6  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    26   6.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   8.0  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.0  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 374 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDP 267
           ++NP  R +SR+       PP+SAP++  S    DP
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDP 226


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 380 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSAL 258
           LFTRN     +S+     L +P  +  ++  SGS  DP+ L
Sbjct: 4   LFTRNKEEEPTSKIDSSELQVPTEATASDILSGSEFDPAKL 44


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 259 SAEGSGREPLGASVGADLGGSSKYSSEALED 351
           S++G+G EP   +     G + K SS+ LE+
Sbjct: 69  SSKGAGNEPKSQNSSTTRGSAKKQSSKGLEE 99


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 368 NPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSSRTSYS 237
           +P    +S+ +  YLLL P+SA     +    DP A++ R ++S
Sbjct: 547 DPGSSPASKQTESYLLLDPKSARAITVNN---DPRAMNKRQTFS 587


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 702 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 565
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 314 PRSAPTEAPSGSRPDPS-ALSSRTSYSLRLNDTK 216
           P SAPT   +G+ P PS +LS+    + +LN ++
Sbjct: 458 PMSAPTSVLTGTSPQPSPSLSTSIMSTPKLNPSE 491


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = -1

Query: 401 RLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSSRTSYSLRLND 222
           RL+  + L  +N       ++    L+L   S     P  S    S +++ T+Y+  +N+
Sbjct: 330 RLSTSKSLVAKNDQQLLQRQSQEPSLILRANSMKASLPDISNTGISGMNTNTTYNTNINN 389

Query: 221 T 219
           T
Sbjct: 390 T 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,230
Number of Sequences: 5004
Number of extensions: 61186
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)