Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021791
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 1.2
12_02_0407 - 18654134-18654172,18654913-18655803 30 2.1
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 29 3.6
02_05_1324 - 35702184-35702267,35702405-35702476,35702675-357027... 29 3.6
02_05_0185 + 26562545-26562685,26563354-26563452 29 3.6
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 29 4.8
01_06_0956 - 33343503-33344086,33344225-33344384 29 4.8
12_02_1002 + 25176434-25176501,25176613-25176859,25178106-251781... 28 6.3
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 6.3
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 28 6.3
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 28 6.3
09_01_0025 - 441528-444284 28 8.3
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 8.3
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 655 PWNSNAQAEKKTLPGPLGGVFRP 587
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 512 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 676
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>06_02_0211 -
13043968-13044646,13044752-13045037,13045903-13045979,
13046039-13046139,13046348-13046412,13048296-13048581
Length = 497
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 440 TPHRHKISP*A*-DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPS 264
+PHR ++ P + T P P +RA L L++ P + S S PD +
Sbjct: 24 SPHRSELEPEPEPESETDADADAALQPPPPPPARAPLSSLVVKPSPREGDGASSSYPDAA 83
Query: 263 ALSSRTS 243
A ++R+S
Sbjct: 84 AAAARSS 90
>02_05_1324 -
35702184-35702267,35702405-35702476,35702675-35702740,
35702826-35702857,35702941-35703100,35703254-35703389,
35703453-35703598,35703827-35704072,35704152-35704259,
35704436-35704557,35704730-35704820,35704903-35705133,
35705212-35705355,35705875-35705951,35706158-35706281,
35706368-35706535,35706625-35706948
Length = 776
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Frame = -1
Query: 371 RNPSPRQSS---RASLEYLLLPPRSAPTEA--PSGSRPDPSALSSR-TSYSLRLNDTKL 213
R P+P SS R+ LLL P S+P A P+ RP P+ S+ S S+ +D L
Sbjct: 22 RLPNPTSSSYTSRSRSRALLLLPASSPLRAFCPASRRPSPATCSAAYASSSMATDDNPL 80
>02_05_0185 + 26562545-26562685,26563354-26563452
Length = 79
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 482 LSERESGSYPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSG 616
L+ R GS G G+ ++ +++T +GN WPE ++ G
Sbjct: 31 LTGRSGGSLGGSGGGSTDLMKNEAIQTE--KGNKAWPEATKQKDG 73
>03_02_0774 +
11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -1
Query: 431 RHKISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSS 252
RH P + RL + +P+P L L+PP +A E P R D +A S+
Sbjct: 3 RHLAPPGSFHRLLASRHYPPSSPAPPPRPLLLLPKTLIPPAAAAMEFPRRGRRDVAAASA 62
Query: 251 RTSYS 237
S S
Sbjct: 63 PASSS 67
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -1
Query: 365 PSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDPSALSSRTS 243
PSPR R + + LPP AP +P+ P P+A R S
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRRHS 172
>12_02_1002 +
25176434-25176501,25176613-25176859,25178106-25178171,
25178754-25178822,25179007-25179080,25180850-25180991,
25181546-25181596,25181769-25181774
Length = 240
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 224 H*AVTSRTCARRAQKGLGVS---RLEPPSVQILVVVANTPARPW 346
H S C+ + + GV+ PPS +LV+V P RPW
Sbjct: 148 HAQAMSVGCSMKTAEAAGVTCPFLPPPPSSALLVIVEEGPTRPW 191
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 320 LPPRSAPTEAPSGSRPDPSALSSRTSYSLRLNDTKLK 210
+ PR APT P S P P+ +S ++ R D +L+
Sbjct: 464 ITPRPAPTSRPPPSHPHPTVVSLPSAVEERDEDLQLQ 500
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 368 NPSPRQSSRASLEYLLLPPRSAPTEA---PSGSRPDPSALSSRTSY 240
NP+P S+ + L PP +AP A P G P S+ SY
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAYSY 54
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/52 (34%), Positives = 22/52 (42%)
Frame = -3
Query: 693 SSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTI 538
S + + GFHG L+ KL PDL + HF LVF G I
Sbjct: 195 SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGAI 245
>09_01_0025 - 441528-444284
Length = 918
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 320 LPPRSAPTEAPSGSRPDPSALS 255
+P R +PT+ P+GS P PS+++
Sbjct: 13 IPLRCSPTQPPAGSDPIPSSMN 34
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 142 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 59
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,765,443
Number of Sequences: 37544
Number of extensions: 482543
Number of successful extensions: 1713
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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