Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021791
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 33 0.18
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 30 1.7
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 29 3.0
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase... 29 4.0
At5g42370.1 68418.m05159 expressed protein 29 4.0
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 4.0
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 5.2
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 5.2
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 28 6.9
At3g19190.1 68416.m02436 expressed protein 28 6.9
At2g35890.1 68415.m04406 calcium-dependent protein kinase, putat... 28 6.9
At5g22390.1 68418.m02612 expressed protein 27 9.2
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 9.2
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 27 9.2
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 33.1 bits (72), Expect = 0.18
Identities = 24/56 (42%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 401 RLTREQLLFTRNPSPRQSSRASLEYLLLPPRS-APTEAPSGSRPDPSALSSRTSYS 237
+L E+ + PS +S R SL PPRS +PT PSGSR A SS T S
Sbjct: 186 KLGLEENMDRTRPSDNKSDRDSLSPDTGPPRSLSPTLPPSGSRLQNVASSSGTGRS 241
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 437 PHRHKISP*A*DRLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRPDP 267
P K SP D + + F R+P P Q + + P S PT P S P P
Sbjct: 409 PQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +3
Query: 495 NPVPIRNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGRVFF 629
+P P R P + P PR + D +++PP+ GR +
Sbjct: 395 SPPPHRRPTSSPLSAESPRTSSSLSDRSDSDSVESPPKSDGRTIY 439
>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
putative strong similarity to polygalacturonase PGA3
[Arabidopsis thaliana] GI:3152948; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 395
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 160 SAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVSHERFLGALGTT 5
S IHF+ LL+ VS L+ PW C ++P+ +++ F GT+
Sbjct: 281 SDIHFENILLKNVSNPILIDQEYCPW-NQCNKQKPSTIKLANISFKKIRGTS 331
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 670 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 560
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 533 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 664
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 9 VPKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 122
V P KR D+ VGRS DG +GS +P+R R+
Sbjct: 110 VKDQPVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 9 VPKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 122
V P KR D+ VGRS DG +GS +P+R R+
Sbjct: 110 VKDQPVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 380 LFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGSRP---DPSALSSR 249
+F P P S ++ +++ PPR +P+ APS P PS SS+
Sbjct: 70 VFLHTPPPPLSEQSPAKFV--PPRFSPSPAPSSVYPPSTSPSVASSK 114
>At3g19190.1 68416.m02436 expressed protein
Length = 1861
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 482 LSE-RESGSYPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 610
LSE R S P+ G + + P +T +RRGN W +DA+ R
Sbjct: 1352 LSEFRPSSEVPQEGDSSGRELFP---ETDLRRGNSGWYDDASLR 1392
>At2g35890.1 68415.m04406 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase, isoform AK1 (CDPK). [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 520
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 65 MTAGRWPWKSESAKECATTHLPKQPALKMDGAEAFC 172
+T+ WP SESAK+ L + P ++ + C
Sbjct: 351 LTSDPWPQVSESAKDLIRKMLERNPIQRLTAQQVLC 386
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 605 ERSGKSFLFCLSVRVPWNPIEG 670
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -1
Query: 653 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLLKRFRCRVPDRNRIPFRSKGV 474
MEL+RS ++ T +RRLQ L +P E S L + +L V RN P K
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSAV--RNDSPLLLKRN 113
Query: 473 IFH 465
H
Sbjct: 114 FMH 116
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = -1
Query: 365 PSPRQSSRASLEY---LLLPPRSAPTEAPSGSRP---DPSALSSRTSYS 237
P+P QS RA+ PP SAPT AP S+P P A + TS S
Sbjct: 37 PTPSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTESPPAPPTSTSPS 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,338
Number of Sequences: 28952
Number of extensions: 350501
Number of successful extensions: 1125
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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